Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1685 ATGTTTGCGGCAAAGGTTTTCGCCAACTTCTCCGTACACCTCGACGTGTCTCCAACCAACCGCTTAAAAAACGGAGTCACTTTCCGTAACGGCTTCTTAGGAGCGGAGCCCACGAGAAAAAGCGCTTCCACGCTGTGTCTCTGTTCCGTTGACCCCGGCCAAGTCAATGACGATGGCGTTTTCTCCGTTACACCTTCCAGCAAATGCGACGTGGACTACCTCGGGGAAAGCACCAAGGGGAACTTGAACGTTAAGGTGGAGCGTCTCGAGGCTTTTGGAATTGATGGACATGCTGCATTAGAAGGTCCAATTGAGGAGGTGGCCAAAACAGAGGCTAGAGAAGCTGAAGATTTACTGGAAAAATTGGATATTCCGAGTCCTTCTTTGTCAAGAAATTCACCTCGTGGAATATTCTGCACTCGTACACTGAATCTACGGTCAATTAGTGCCATTGGATATGACATGGACTATACCTTGGTGCATTATAATGTGAAgGCTTGGGAAGGGCGGGCTTATGACTACTGTATGGAAAACCTCAAGAATATGGGTTTCCCTGTTGATGGACTTGCATTTGATCCAGACCTGGTTATAAGAGGCCTTGTCATAGATAAAGAGAGAGGCAATTTGGTTAAAGCTGATCGATTTGGTTATATAAAAAGAGCCATGCATGGAACCAAAATGTTATCTACTCGTGCTGTGAGTGAGATGTATGGGAGAGAACTGGTGGACCTGCGGCAGGAGAGTCGATGGGAGTTTCTCAACACATTGTTCTCTGTGTCTGAAGCTGTGGCTTACATGCAGATGGTTGACAAATTGGAGGATGGGGCTATACCATCCAATCTTGGCTCCTTTGATTATAAAAGGCTTTATAAGGCTGTTGAAAAAGCTCTCTTCACAGCACACGTAGAAGGACGCCTCAAGTTTGTGGAGCCTGATCCGGAATTACCCCTCGCACTTCTGGACCAGAAGGAGGCGGGCAAAAAACTTCTGCTCATTACAAACTCAGATTATCATTATACAGACAAAATGATGCATCATTCATTTAGTAGATTCCTTCCCAATGACATGGGTTGGCGAGATTTATTTGACATCGTAATTGTCTCAGCACAGAAGCCAGAATTCTTCCAAATGTCACACCCCATGTATGAAGTGGTGACAGGCGAGGGTCTGATGCGTCCATGCATTAAGGCTCAAACTGGTGGTTTGTACTCAGGGGGGAGTGCGCAAATGGTTGAAAATTCCCTAAATATACATGGAGATGAGATCCTGTATATTGGTGATCATATTTACACTGATGTTAGTCAATCCAAAGTCCATCTGCGATGGCGAACAGCATTGATTTGTCGGGAACTGGAAGAAGAGTACAGTGCCCTAATTCGTAGCCGAGGTCATAGACAATCATTGGTGGAGCTTATAAATCAAAAGGGGGTTGTAGGTGATCTCTTTAACCAACTCCAGCTGGCTCTGCAGAGGCAAAGTAAAGGGCGTCCTACTCAGACTGTTGCTGCAACTAACATGGAGGATGAAAATCTTACTGAAAGCATGCAAAAGCTACTTATTATTATGCAAAGACTAGATGAAAAAATTGCTCCAATGCTAGAGGCAGATGGGGAGCTCTTCAATAAAAGGTGGGGCTATCTATCACGTGCTGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAAGTATGCAGATATATATACCTCTAGGgtgtcaaattttttatattacacacCTTTTATGTATTTCCGCTCTCCGGAACAGAACCTTGCACATGATTCATATACACACTATTGTTCACAAGTTAATAAGTTTCCTTCCTATGGAAAATTGGACGAAAACAGAGGGgatatagaagaaataaatgttTGTGGTTGA 1884 0.4337 MFAAKVFANFSVHLDVSPTNRLKNGVTFRNGFLGAEPTRKSASTLCLCSVDPGQVNDDGVFSVTPSSKCDVDYLGESTKGNLNVKVERLEAFGIDGHAALEGPIEEVAKTEAREAEDLLEKLDIPSPSLSRNSPRGIFCTRTLNLRSISAIGYDMDYTLVHYNVKAWEGRAYDYCMENLKNMGFPVDGLAFDPDLVIRGLVIDKERGNLVKADRFGYIKRAMHGTKMLSTRAVSEMYGRELVDLRQESRWEFLNTLFSVSEAVAYMQMVDKLEDGAIPSNLGSFDYKRLYKAVEKALFTAHVEGRLKFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMHHSFSRFLPNDMGWRDLFDIVIVSAQKPEFFQMSHPMYEVVTGEGLMRPCIKAQTGGLYSGGSAQMVENSLNIHGDEILYIGDHIYTDVSQSKVHLRWRTALICRELEEEYSALIRSRGHRQSLVELINQKGVVGDLFNQLQLALQRQSKGRPTQTVAATNMEDENLTESMQKLLIIMQRLDEKIAPMLEADGELFNKRWGYLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLYYTPFMYFRSPEQNLAHDSYTHYCSQVNKFPSYGKLDENRGDIEEINVCG 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1685 627 PANTHER HAD-SUPERFAMILY HYDROLASE, SUBFAMILY IG, 5'-NUCLEOTIDASE 54 604 - -
Ssu1g1685 627 CDD HAD_cN-II 138 468 - -
Ssu1g1685 627 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 54 604 IPR008380 -
Ssu1g1685 627 Pfam 5' nucleotidase family 137 596 IPR008380 -
Ssu1g1685 627 Gene3D - 294 477 IPR023214 -
Ssu1g1685 627 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 137 467 IPR008380 -
Ssu1g1685 627 SUPERFAMILY HAD-like 134 597 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1685 Ssu-Chr1 41063418 41090366 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1685 - - gmx:100800826 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1685 1 41063418 41090366 Ssu1g1685 1 41063418 41090366 ECH
Ssu6g0500 6 7698007 7705102 Ssu1g1685 1 41063418 41090366 PCT