Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02798 ATGGCTCCAATTCGCTCCACTGGATTTGTTGATCCTGGTTGGGATCATGGCATTGCTCAAGATGAGCGGAAAAAGAAGGTTAGATGTAATTACTGTGGGAAAATTGTTAGTGGTGGGATATACAGATTAAAGCAGCATTTAGCCCGAGTTTCTGGTGAAGTAACATACTGTGAAAAGGCTCCTGAGGAAGTCTACCTAAAAATGAAGGAAAACCTGGAAGGGTGCCGTTCCAATAAGAAACAAAAGCGGGTTGATGCTCAAGCATATATGAATTTTCACTCTAATGATGATGAAGATGATGAAGAGCAAGTTGGGTGTAGAAGCAAAGGGAAGCAATTGATGGATGATAGGAATGTTTCTGTAAATTCAACTCCTCTTCGGTCCTTAGGATATATTGACCCTGGATGGGAACATGGTGTTGCTCAGGATGAGAGAAAGAAAAAAGTCAAATGCAGTTACTGTGAGAAAGTTGTTAGTGGAGGTATTAATAGGTTTAAACAACATTTGGCTAGAATTCCTGGAGAGGTAGCACCTTGTAAAAGTGCTCCAGAAGAAGTTTATCTGAAAATAAAAGAGAATATGAAATGGCATCGCACGGGAAAGAGACATCGGCAACCTGAGGCTAAGGAAATGATGCCTTTCTATCCAAAGTCTGATAATGAAGATGACGACTATGAGCAAGCGGAAGATACTTTGCATCATATGAATAGAGAAGCTTTGATCGATATTGATAAGAGATACTCTAAAGATACAGTGAAGACCTTCAAGGGAATGTCAGCTAATACTGGCCCAGAACCAGTGTTGAGAAGATCAAGATTGGATAGTTTTTACCTGAAACTTCCCACAAATCAGACTCCTCAAACTTACAAACAACTAAAAGTTAAGACAGGACCCACTAAGAAGTTACGCAAGCAAGTTATTTCTTCCATTTGCAAGTTCTTTTGCCATGCTGGAATTCCTTTACAGACTGCAGACTCCAAATATTTTCATAAAATGCTGGAAATGGTTGGCCAATATGGACAAGGACTGGTATGCCCGCCCAGCCAAGTTATTTCTGGTCGCTATTTGCAGGATGAAATCAATTCCATTAAGAATTACCTTATTGAATATAAGGCTTCCTGGGCAATCACTGGTTGTTCTATAATGACTGATAGTTGGAGAGATGCACAGGGTAGGACAATTATTAACTTTCTTGTTTCATGCCCTCATGGCATATACTTTGCTTCTTCAGTTGATGCCACTAATGTGGTAGAAGATGCACCAAATTTATTTAAGCTTCTTGACAAAGTAGTGGAAGAAATAGGTGAGGAAAATGTAGTACAGGTAATCACTGAAAATAGTCCCAGCTATAAAGCTGCCGGGAAAATGCTTGAAGAGAGGAGAAGGAATTTATTCTGGACGCCTTGTGCTACCTCTTGTATTAGTCAGGGGAAGGATCTTCTAAAGCCAGCGGTTACCCAGTGTGCCTCTAGCTTTGCTACATTGCAGAGCTTGTTGGATCATCGAGTTAGTCTTAGACGAATGTTTCTTTCAAACAAATGGATGTCATCCAGGTTCTCCAGCTCAACTGAGGGGAAAGAGGTGCAAAAAATTATTTTGAATGTCACATTTTGGAAGAAAATGCAGTATGTGAGTAAGTCAGTAGATCCCATATTTCAAGTGCTTCAAAAGGTGTCTAGTGGTGAGAGCTTGTCAATGCCGTATATATATAACGACTTGTACAGGGCAAAACTTGTAATCAAATCTGTTCATGGCGATGATGCACGGAAATATGAACCATTCTGGAAGGTGATAGACAGGCATTGTAACTCTCTCTTATGTCATCCTCTTTACTTGGCCGCTTATTTCTTGAATCCATCATACCGATATCGTCAGGATTTTGTTGCACATTCCGAGGTAGTGCGAGGGCTGAATGAATGCATTGTTCGGCTAGAGCTAGATAATATGAGACGGATATCTGCATCAATGCAAATTGCTCATTATAATTCTGCACAAGATGACTTTGGAACTGAATTGGCAATTAGCACAAGAACGGGTCTTGAACCAGCTGCTTGGTGGCAACAACATGGAATAAGTTGCTTAGAGTTGCAAAGAATAGCCGTTCGCATATTAAGTCAAACATGCTCATCGTTTGCTTGTGAGCATGATTGGAGTATGTATGATCAGTTATATAGCAAAAGACAAAATCGTCTATCACAGAAGAAACTTAATGATATCATGTATGTTCACTACAACTTGCGATTTAGAGAATACCAGGTAAGAAAAAGATCCAGGGAGTCAAAGTCTACCTCTGTTGACAGTGTTCTACTAGAGCATTTGCTTGGTGACTGGATAGTTGATACCACTGCACAAGGCTATGATGGTGACAAGAATATCTCTTTTGGAGTCGAACTAGACGATGAATATGAAAACAATTCAGTTGATTATGAAAATGGACATGGAAGGCTTCTAAAGGGTTCCCATGAGCAGGTCTCTATGGCTGATGGAGCAGTAGGATCATCAGATGGAGATCATGCTAACATTGATGGTGCCACTGATGATGATTCCGACCTGAATTATTTTGATGATGACTTGAGCGAGTAA 2583 0.4019 MAPIRSTGFVDPGWDHGIAQDERKKKVRCNYCGKIVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLKMKENLEGCRSNKKQKRVDAQAYMNFHSNDDEDDEEQVGCRSKGKQLMDDRNVSVNSTPLRSLGYIDPGWEHGVAQDERKKKVKCSYCEKVVSGGINRFKQHLARIPGEVAPCKSAPEEVYLKIKENMKWHRTGKRHRQPEAKEMMPFYPKSDNEDDDYEQAEDTLHHMNREALIDIDKRYSKDTVKTFKGMSANTGPEPVLRRSRLDSFYLKLPTNQTPQTYKQLKVKTGPTKKLRKQVISSICKFFCHAGIPLQTADSKYFHKMLEMVGQYGQGLVCPPSQVISGRYLQDEINSIKNYLIEYKASWAITGCSIMTDSWRDAQGRTIINFLVSCPHGIYFASSVDATNVVEDAPNLFKLLDKVVEEIGEENVVQVITENSPSYKAAGKMLEERRRNLFWTPCATSCISQGKDLLKPAVTQCASSFATLQSLLDHRVSLRRMFLSNKWMSSRFSSSTEGKEVQKIILNVTFWKKMQYVSKSVDPIFQVLQKVSSGESLSMPYIYNDLYRAKLVIKSVHGDDARKYEPFWKVIDRHCNSLLCHPLYLAAYFLNPSYRYRQDFVAHSEVVRGLNECIVRLELDNMRRISASMQIAHYNSAQDDFGTELAISTRTGLEPAAWWQQHGISCLELQRIAVRILSQTCSSFACEHDWSMYDQLYSKRQNRLSQKKLNDIMYVHYNLRFREYQVRKRSRESKSTSVDSVLLEHLLGDWIVDTTAQGYDGDKNISFGVELDDEYENNSVDYENGHGRLLKGSHEQVSMADGAVGSSDGDHANIDGATDDDSDLNYFDDDLSE 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02798 860 Pfam BED zinc finger 14 49 IPR003656 GO:0003677
Trre3g02798 860 Pfam BED zinc finger 136 171 IPR003656 GO:0003677
Trre3g02798 860 Coils Coil 218 238 - -
Trre3g02798 860 PANTHER OSJNBA0013A04.12 PROTEIN 20 84 - -
Trre3g02798 860 ProSiteProfiles Zinc finger BED-type profile. 130 186 IPR003656 GO:0003677
Trre3g02798 860 Pfam Protein of unknown function (DUF 659) 346 475 IPR007021 -
Trre3g02798 860 SUPERFAMILY Ribonuclease H-like 371 748 IPR012337 -
Trre3g02798 860 ProSiteProfiles Zinc finger BED-type profile. 8 64 IPR003656 GO:0003677
Trre3g02798 860 MobiDBLite consensus disorder prediction 827 860 - -
Trre3g02798 860 Pfam hAT family C-terminal dimerisation region 675 746 IPR008906 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02798 Trre-Chr3 30465913 30469794 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02798 - - tpra:123882853 1683.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02798 3 30465913 30469794 Trre3g02798 3 30465913 30469794 ECH