Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00423 ATGGCTGCCAAGAAGGCGTGTGAGTCATTCTCAAAGTCTTTGATTGAGGATGTGCATAGATGGGGTTGCTTGAAGCAGACAGGAGTAAGTCTGAGGTACATGATGGAGTTTGGGTCCAAACCCATTTCCAAGAATTTGCTGATTTCTGCTCAGTTTCTTCAAAAAGAGCTAGCCATTAGAATTGCCAGACGAGCTATTGAGCTTGAGAATCTTCCCTATGGTTTGTCTCAAAAGCCTGCTGTTTTGAAGGTTAGGGATTGGTATCTGGATTCTTTCCGTGATCTCAGAGCCTTCCCTGATATCAAGAATATGAACGATGAAAGAGAGTTCACTGAAATGATCAAGGCCATCAAAGTGAGACACAACAATGTGGTTCCCACAATGGCCTTGGGTGTTCAGCAATTGAAGAAAGGAATGGATCCAAAGATTGTTTACGAAGATCTTGTCGAGATTCACCAGTTCCTTGATCGCTTTTACATGTCAAGAATTGGGATCCGAATGCTTATTGGGCAGCATGTTGAGTTGCACAATCCCAATCCTCCACCCTTTGTTGTTGGTTATATACACACAAAAATGTCTCCTGTGGAGGTGGCCACGAACGCCAGTGAGGATGCTCGTGCTATATGTTGTCGTGAATATGGAAGTGCCCCTGACGTCCGAATTTATGGAGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCACTGCGTGCTGTCCAAGAACGTTTTATGGATTCTGATAAAGTTGCACCTCCCATTAGAATCATAGTTGCTGATGGGATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATTCCAAGAAGTGGTTTGCCTAAAATTTTTACATATCTATATAGTACAGCCAAAAATCCATTGGATGAGCATTCAGATCTTGGAATAGGTGAGAATGTGACAATGGCTGGATATGGATATGGACTTCCCATTAGTCGCCTATATGCTCGGTATTTTGGAGGTGATCTTCAAATGATCTCTATGGAAGGATATGGGACTGATGCATATCTCCATTTGTCTCGTTTGGGAGATTCACAAGAACCTTTGCCTTGA 1110 0.4261 MAAKKACESFSKSLIEDVHRWGCLKQTGVSLRYMMEFGSKPISKNLLISAQFLQKELAIRIARRAIELENLPYGLSQKPAVLKVRDWYLDSFRDLRAFPDIKNMNDEREFTEMIKAIKVRHNNVVPTMALGVQQLKKGMDPKIVYEDLVEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPFVVGYIHTKMSPVEVATNASEDARAICCREYGSAPDVRIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFMDSDKVAPPIRIIVADGIEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAKNPLDEHSDLGIGENVTMAGYGYGLPISRLYARYFGGDLQMISMEGYGTDAYLHLSRLGDSQEPLP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00423 369 ProSiteProfiles Histidine kinase domain profile. 236 362 IPR005467 -
Vian4g00423 369 PANTHER PYRUVATE DEHYDROGENASE KINASE 8 369 IPR039028 GO:0004672
Vian4g00423 369 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 191 358 IPR036890 -
Vian4g00423 369 Gene3D - 191 368 IPR036890 -
Vian4g00423 369 SMART HKATPase_4 231 362 IPR003594 -
Vian4g00423 369 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 28 188 IPR018955 -
Vian4g00423 369 Gene3D - 3 181 IPR036784 -
Vian4g00423 369 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 17 179 IPR036784 -
Vian4g00423 369 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 359 IPR003594 -
Vian4g00423 369 FunFam [Pyruvate dehydrogenase (Acetyl-transferring)] kinase mitochondrial 191 368 - -
Vian4g00423 369 PRINTS Bacterial sensor protein C-terminal signature 346 359 IPR004358 GO:0016310|GO:0016772
Vian4g00423 369 PRINTS Bacterial sensor protein C-terminal signature 322 340 IPR004358 GO:0016310|GO:0016772
Vian4g00423 369 PRINTS Bacterial sensor protein C-terminal signature 276 290 IPR004358 GO:0016310|GO:0016772
Vian4g00423 369 FunFam [Pyruvate dehydrogenase (Acetyl-transferring)] kinase, mitochondrial 6 183 - -
Vian4g00423 369 CDD HATPase_PDK-like 193 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00423 Vian-Chr4 4863911 4866873 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00423 K00898 - gmx:100785344 714.146