Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03621 ATGGCAGCCAAGAAGGCCTGTGAATCATTCTCCAAGAGCTTGATTGAGGAGGTGCATAGATGGGGTTGCTTGAAGCAGACAGGGGTGAGCTTGAGGTACATGATGGAATTTGGGTCCAAACCCACTAACAAGAATTTGCTGATTTCTGCACAGTTCCTTCACAAGGAGCTTGCTATTAGGATTGCAAGGAGAGCTATTGAGCTTGAGAATCTTCCCTATGGTTTGTCTCTAAAACCTGCTATCTTGAAGGTTAGGGATTGGTACGTTGATTCTTTCCGTGATCTTAGATCCTTTCCTGACATCAAGAATATGACTGATGAGAAAGAGTTCACTGAAATGATCAAGGCCATTAAAGTGAGACACAACAATGTGGTACCTACAATGGCCATGGGTGTTCAACAATTGAAGAAAGGTATGGATCCAAAGATTGTTTATGAAGATCTTGTTGAGATTCATCAGTTCCTCGATCGCTTTTACATGTCAAGAATTGGAATCCGCATGCTTATCGGGCAGCATGTTGAGTTGCACAATCCCAATCCTCCTCCCCATTGCGTTGGTTATATACATACAAAAATGTCTCCTGTGGAGGTGGCGAGGAATGCCAGTGAGGATGCACGCTCTATATGTTGTCGTGAATATGGCAGTGCCCCTGATGTCCATATTTATGGAGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTCAAGAACTCACTGCGTGCTGTCCAAGAGCGTTTTATGGATTCTGACAAAGTTGCACCTCCTGTTAGAATAATAGTTGCTGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATACCAAGAAGTGGTCTGCCAAAAATTTTTACATATCTGTATAGTACAGCCAAGAACCCATTGGATGAGCATCCTGATCTTGGAGTAGACTATAATGTGACAATGGCTGGATATGGATATGGGCTTCCTATTAGCCGCCTATATGCCCGGTATTTTGGAGGTGATCTTCAAATAATCTCTATGGAAGGATATGGTTGTTTATTCACAGGGACTGATGCATATCTCCATTTGTCTCGTCTGGGAGATTCACAAGAGCCATTGCCCTGA 1125 0.4302 MAAKKACESFSKSLIEEVHRWGCLKQTGVSLRYMMEFGSKPTNKNLLISAQFLHKELAIRIARRAIELENLPYGLSLKPAILKVRDWYVDSFRDLRSFPDIKNMTDEKEFTEMIKAIKVRHNNVVPTMAMGVQQLKKGMDPKIVYEDLVEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCVGYIHTKMSPVEVARNASEDARSICCREYGSAPDVHIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFMDSDKVAPPVRIIVADGIEDVTIKVSDEGGGIPRSGLPKIFTYLYSTAKNPLDEHPDLGVDYNVTMAGYGYGLPISRLYARYFGGDLQIISMEGYGCLFTGTDAYLHLSRLGDSQEPLP. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03621 374 PANTHER PYRUVATE DEHYDROGENASE KINASE 8 374 IPR039028 GO:0004672
Seca6g03621 374 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 28 189 IPR018955 -
Seca6g03621 374 Gene3D - 3 183 IPR036784 -
Seca6g03621 374 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 355 IPR003594 -
Seca6g03621 374 FunFam [Pyruvate dehydrogenase (Acetyl-transferring)] kinase mitochondrial 191 373 - -
Seca6g03621 374 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 190 355 IPR036890 -
Seca6g03621 374 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 16 179 IPR036784 -
Seca6g03621 374 Gene3D - 191 373 IPR036890 -
Seca6g03621 374 PRINTS Bacterial sensor protein C-terminal signature 322 340 IPR004358 GO:0016310|GO:0016772
Seca6g03621 374 PRINTS Bacterial sensor protein C-terminal signature 276 290 IPR004358 GO:0016310|GO:0016772
Seca6g03621 374 FunFam [Pyruvate dehydrogenase (Acetyl-transferring)] kinase, mitochondrial 6 183 - -
Seca6g03621 374 SMART HKATPase_4 231 367 IPR003594 -
Seca6g03621 374 CDD HATPase_PDK-like 193 364 - -
Seca6g03621 374 ProSiteProfiles Histidine kinase domain profile. 236 355 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03621 Seca-Chr6 103496933 103500774 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03621 K00898 - gmx:100814079 711.064