Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g1229 Acco10g2629 . Accr4g00154 . . . . . . . . . . . Alju08g0156 . . . Apr1g0575 . . . . . Bisa09g0820 . Bva12g01474 . . . . . Dere04g1320 . . . Enph1g1890 . Glsi08g0865 . . . . . . . . . Lal17g0640 . . . . . Lan15g0574 . . . . . Lapu9g01252 . . . . Lele02g0126 Lele03g0130 Lele04g0126 . . . . Lja1g4679 . . . . . . . Mibi05g0124 . . . . . Phco7g01552 . Prci15g0188 . Psa5g1645 . . . . . . . . . Pvu9g0423 . . . . . . . . . Sto9g2644 . . . . . . . . . . . Vimu10g01515 . . . Vivi3g02655 . . .
Vvi16g1230 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g01475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2645 Sto5g1389 . . . . . . . . . . . . . . . . . .
Vvi16g1231 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g01476 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g4680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2647 . . . . . . . . . . . . . . . . . . .
Vvi16g1232 Acco10g2625 . Accr4g00157 . Adu10g01596 . . . . . . . . . Alju08g0159 . . . Apr1g0577 . Arst10g02069 . . . Bisa09g0823 . Bva12g01477 . . . . . Dere04g1316 . . . Enph1g1888 . Glsi08g0868 . . . . . . . . . Lal17g0638 Lal4g0554 Lal21g0607 . . . Lan15g0576 Lan15g0576 Lan15g0576 . . . Lapu9g01254 . . . Lele01g0129 Lele02g0128 Lele03g0135 Lele04g0128 . . . . Lja1g4682 . . . . . . . Mibi05g0129 . . . . . Phco7g01547 . Prci15g0192 . . . . . . . . . Pumo10g01513 . Pvu9g0421 . Rops10g02214 . Seca4g02191 . . . . . Sto9g2651 Sto5g1386 . . . . . . Vian4g01256 . Vifa2g02980 . Vimu10g01513 . Viun9g02004 . Vivi3g02660 . . .
Vvi16g1233 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1234 . . . . Adu10g01597 . . . . . . . . . Alju08g0160 . . . Apr1g0578 . Arst10g02070 . . . Bisa09g0824 . Bva12g01478 . . . . . Dere04g1315 . . . . . Glsi08g0869 . . . . . . . . . . . Lal21g0606 . . . . . . . . . Lapu9g01255 . . . Lele01g0130 . . . . . . . Lja1g4683 . . . . . . . Mibi05g0130 . . . . . Phco7g01546 . . . . . . . . . . . Pumo10g01512 . Pvu9g0419 . Rops10g02213 . Seca4g02192 . . . . . Sto9g2652 . . . . . . . Vian4g01257 . . . Vimu10g01512 . Viun9g02005 . . . . .
Vvi16g1235 Acco10g2623 . Accr4g00159 . Adu10g01599 . . . . . . . . . Alju08g0161 . . . Apr1g0579 . Arst4g01290 . . . Bisa09g0825 . Bva12g01479 . . . . . Dere04g1314 . . . . . Glsi08g0870 . . . . . . . . . . Lal4g0553 . . . . . . . . . . Lapu9g01256 . . . . . . . . . . . Lja1g4684 . . . . . . . Mibi05g0131 . . . . . Phco7g01545 . Prci15g0195 . . . . . . . . . Pumo10g01511 . Pvu9g0418 . Rops10g02212 . . . . . . . Sto9g2653 . . . . . . . . . . . Vimu10g01511 . Viun9g02006 . . . . .
Vvi16g1236 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1237 Acco10g2622 . Accr4g00160 . Adu10g01600 . . . . . . . . . Alju08g0162 . . . Apr1g0580 . Arst10g02072 . . . Bisa09g0827 . . . . . . . Dere04g1312 . . . Enph1g1884 . Glsi08g0872 . . . . . . . . . Lal17g0637 . . . . . Lan15g0577 . . . . . Lapu9g01257 . . . Lele01g0132 Lele02g0131 Lele03g0138 Lele04g0130 . . . . Lja1g4686 . . . . . . . Mibi05g0133 . . . . . Phco7g01543 . Prci15g0196 . . . . . . . . . Pumo10g01510 . Pvu9g0417 . . . Seca4g02195 . . . . . Sto9g2655 . . . . . . . Vian4g01258 . Vifa2g02979 . Vimu10g01510 . Viun9g02007 . Vivi3g02661 . . .
Vvi16g1238 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g01854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2656 . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi16g1229 Chr16 21010799 21014022 -
Acco Acco10g2629 Chr10 37009035 37012281 +
Accr Accr4g00154 Chr4 1613645 1616902 -
Alju Alju08g0156 Chr08 1229253 1231891 -
Apr Apr1g0575 Chr1 7031962 7034768 -
Bisa Bisa09g0820 Chr09 11867822 11871646 -
Bva Bva12g01474 Chr12 12654377 12661503 -
Dere Dere04g1320 Chr04 14922270 14926282 +
Enph Enph1g1890 Chr1 43675598 43686695 +
Glsi Glsi08g0865 Chr08 6473754 6478237 -
Lal Lal17g0640 Chr17 4540778 4544597 +
Lan Lan15g0574 Chr15 13110205 13114836 -
Lapu Lapu9g01252 Chr9 26494194 26496408 -
Lele Lele02g0126 Chr02 739117 742218 -
Lele Lele03g0130 Chr03 725530 728357 -
Lele Lele04g0126 Chr04 738428 740481 -
Lja Lja1g4679 Chr1 61671863 61678192 -
Mibi Mibi05g0124 Chr05 1459446 1463548 -
Phco Phco7g01552 Chr7 14734646 14737129 +
Prci Prci15g0188 Chr15 1324875 1330060 -
Psa Psa5g1645 Chr5 128244554 128251744 -
Pvu Pvu9g0423 Chr9 8142343 8147482 +
Sto Sto9g2644 Chr9 28699922 28702921 -
Vimu Vimu10g01515 Chr10 16712928 16718713 +
Vivi Vivi3g02655 Chr3 44556890 44558768 -
Vvi Vvi16g1230 Chr16 21017497 21022223 -
Bva Bva12g01475 Chr12 12662053 12665125 -
Sto Sto9g2645 Chr9 28704760 28708815 -
Sto Sto5g1389 Chr5 9500305 9502948 +
Vvi Vvi16g1231 Chr16 21026820 21027233 +
Bva Bva12g01476 Chr12 12668131 12668796 +
Lja Lja1g4680 Chr1 61696786 61697491 +
Sto Sto9g2647 Chr9 28714743 28715099 +
Vvi Vvi16g1232 Chr16 21029213 21037898 -
Acco Acco10g2625 Chr10 36989969 36993442 +
Accr Accr4g00157 Chr4 1653106 1656727 -
Adu Adu10g01596 Chr10 70448909 70451803 -
Alju Alju08g0159 Chr08 1251007 1254238 -
Apr Apr1g0577 Chr1 7052078 7056540 -
Arst Arst10g02069 Chr10 69579795 69582623 -
Bisa Bisa09g0823 Chr09 11899651 11902864 -
Bva Bva12g01477 Chr12 12671154 12675573 -
Dere Dere04g1316 Chr04 14886589 14890951 +
Enph Enph1g1888 Chr1 43662622 43667050 +
Glsi Glsi08g0868 Chr08 6489059 6496979 -
Lal Lal17g0638 Chr17 4519517 4523117 +
Lal Lal4g0554 Chr4 4026564 4031100 +
Lal Lal21g0607 Chr21 4578430 4583954 +
Lan Lan15g0576 Chr15 13148966 13152863 -
Lan Lan15g0576 Chr15 13148966 13152863 -
Lan Lan15g0576 Chr15 13148966 13152863 -
Lapu Lapu9g01254 Chr9 26516366 26521598 -
Lele Lele01g0129 Chr01 767789 770327 -
Lele Lele02g0128 Chr02 744693 747856 -
Lele Lele03g0135 Chr03 737831 740374 -
Lele Lele04g0128 Chr04 745720 748879 -
Lja Lja1g4682 Chr1 61776898 61779864 -
Mibi Mibi05g0129 Chr05 1477650 1481246 -
Phco Phco7g01547 Chr7 14673105 14677347 +
Prci Prci15g0192 Chr15 1354542 1361467 -
Pumo Pumo10g01513 Chr10 20031323 20035272 +
Pvu Pvu9g0421 Chr9 8115092 8119001 +
Rops Rops10g02214 Chr10 39676694 39681589 +
Seca Seca4g02191 Chr4 37145849 37151262 -
Sto Sto9g2651 Chr9 28747070 28750817 -
Sto Sto5g1386 Chr5 9488874 9491601 +
Vian Vian4g01256 Chr4 25466884 25470961 -
Vifa Vifa2g02980 Chr2 852234359 852237676 +
Vimu Vimu10g01513 Chr10 16663458 16667977 +
Viun Viun9g02004 Chr9 29844666 29849103 -
Vivi Vivi3g02660 Chr3 44610920 44614412 -
Vvi Vvi16g1233 Chr16 21040651 21041934 -
Vvi Vvi16g1234 Chr16 21043968 21050008 +
Adu Adu10g01597 Chr10 70546287 70553399 +
Alju Alju08g0160 Chr08 1255133 1258966 +
Apr Apr1g0578 Chr1 7058011 7062068 +
Arst Arst10g02070 Chr10 69677096 69683356 +
Bisa Bisa09g0824 Chr09 11927631 11931618 +
Bva Bva12g01478 Chr12 12675897 12682170 +
Dere Dere04g1315 Chr04 14879963 14884331 -
Glsi Glsi08g0869 Chr08 6498289 6503810 +
Lal Lal21g0606 Chr21 4568708 4576102 -
Lapu Lapu9g01255 Chr9 26528498 26533678 +
Lele Lele01g0130 Chr01 771820 775581 +
Lja Lja1g4683 Chr1 61786243 61790670 +
Mibi Mibi05g0130 Chr05 1482791 1486210 +
Phco Phco7g01546 Chr7 14659874 14663890 -
Pumo Pumo10g01512 Chr10 20020825 20025036 -
Pvu Pvu9g0419 Chr9 8093995 8098588 -
Rops Rops10g02213 Chr10 39672210 39676079 -
Seca Seca4g02192 Chr4 37152681 37158551 +
Sto Sto9g2652 Chr9 28756096 28756604 +
Vian Vian4g01257 Chr4 25492553 25496809 +
Vimu Vimu10g01512 Chr10 16631093 16636690 -
Viun Viun9g02005 Chr9 29855392 29860032 +
Vvi Vvi16g1235 Chr16 21050459 21051593 -
Acco Acco10g2623 Chr10 36983495 36984624 +
Accr Accr4g00159 Chr4 1662532 1663629 -
Adu Adu10g01599 Chr10 70553181 70556945 -
Alju Alju08g0161 Chr08 1259662 1260632 -
Apr Apr1g0579 Chr1 7062394 7063538 -
Arst Arst4g01290 Chr4 13655327 13656584 +
Bisa Bisa09g0825 Chr09 11932404 11934475 -
Bva Bva12g01479 Chr12 12680658 12681806 -
Dere Dere04g1314 Chr04 14877552 14879479 +
Glsi Glsi08g0870 Chr08 6504630 6506582 -
Lal Lal4g0553 Chr4 4021867 4023820 +
Lapu Lapu9g01256 Chr9 26533256 26534375 -
Lja Lja1g4684 Chr1 61791192 61792119 -
Mibi Mibi05g0131 Chr05 1486583 1488699 -
Phco Phco7g01545 Chr7 14658119 14659241 +
Prci Prci15g0195 Chr15 1367267 1368596 -
Pumo Pumo10g01511 Chr10 20019514 20020729 +
Pvu Pvu9g0418 Chr9 8092445 8093296 +
Rops Rops10g02212 Chr10 39670627 39671873 +
Sto Sto9g2653 Chr9 28757064 28759101 -
Vimu Vimu10g01511 Chr10 16630611 16631360 +
Viun Viun9g02006 Chr9 29860166 29861777 -
Vvi Vvi16g1236 Chr16 21056301 21057920 +
Vvi Vvi16g1237 Chr16 21061024 21061461 -
Acco Acco10g2622 Chr10 36980177 36980617 +
Accr Accr4g00160 Chr4 1666275 1666715 -
Adu Adu10g01600 Chr10 70557450 70558750 -
Alju Alju08g0162 Chr08 1263716 1264554 -
Apr Apr1g0580 Chr1 7065698 7068671 -
Arst Arst10g02072 Chr10 69687915 69689600 -
Bisa Bisa09g0827 Chr09 11963487 11963927 -
Dere Dere04g1312 Chr04 14874138 14874578 +
Enph Enph1g1884 Chr1 43648887 43652694 +
Glsi Glsi08g0872 Chr08 6509200 6509637 -
Lal Lal17g0637 Chr17 4514840 4515277 +
Lan Lan15g0577 Chr15 13156567 13158712 -
Lapu Lapu9g01257 Chr9 26536463 26539913 -
Lele Lele01g0132 Chr01 781160 784606 -
Lele Lele02g0131 Chr02 757468 757908 -
Lele Lele03g0138 Chr03 750851 751291 -
Lele Lele04g0130 Chr04 751666 752887 -
Lja Lja1g4686 Chr1 61823076 61824960 -
Mibi Mibi05g0133 Chr05 1490647 1493910 -
Phco Phco7g01543 Chr7 14654823 14655266 +
Prci Prci15g0196 Chr15 1373055 1376182 -
Pumo Pumo10g01510 Chr10 20014643 20017642 +
Pvu Pvu9g0417 Chr9 8088026 8089683 +
Seca Seca4g02195 Chr4 37176728 37177168 -
Sto Sto9g2655 Chr9 28761825 28762265 -
Vian Vian4g01258 Chr4 25500181 25503467 -
Vifa Vifa2g02979 Chr2 851705345 851705770 +
Vimu Vimu10g01510 Chr10 16626088 16628943 +
Viun Viun9g02007 Chr9 29862864 29865653 -
Vivi Vivi3g02661 Chr3 44630619 44631770 -
Vvi Vvi16g1238 Chr16 21063729 21065000 +
Bva Bva12g01854 Chr12 15026973 15029109 +
Sto Sto9g2656 Chr9 28764820 28765825 +