Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g1239 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g01856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2660 . . . . . . . . . . . . . . . . . . .
Vvi16g1240 Acco10g2617 . Accr4g00164 . Adu10g01602 . . . . . . . . . Alju08g0166 . . . Apr1g0581 . Arst10g02073 . . . Bisa09g0832 . Bva12g01482 . . . . . Dere04g1306 . . . Enph1g1881 . Glsi08g0876 . . . . . . . . . . Lal4g0552 Lal21g0605 . . . . . . . . . Lapu9g01258 . . . Lele01g0135 Lele02g0135 Lele03g0142 Lele04g0134 . . . . Lja1g4688 . . . . . . . Mibi05g0137 . . . . . Phco7g01542 . . . . . . . . . . . Pumo10g01509 . Pvu9g0416 . Rops10g02207 . Seca4g02196 . . . . . Sto9g2663 Sto5g1384 . . . . . . Vian4g01260 . Vifa2g02978 . Vimu10g01505 . Viun9g02009 . Vivi3g02662 . . .
Vvi16g1241 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1242 Acco10g2616 . . . Adu10g01610 . . . . . . . . . Alju08g0167 . . . Apr1g0583 . Arst10g02080 . . . Bisa09g0833 . Bva12g01484 . . . . . . . . . Enph1g1880 . Glsi08g0878 . . . . . . . . . Lal17g0636 . . . . . Lan15g0579 . . . . . Lapu9g01259 . . . Lele01g0136 . Lele03g0143 . . . . . Lja1g4691 . . . . . . . Mibi05g0139 . . . Phac9g01246 . Phco7g01540 . . . Psa5g1651 . . . . . . . Pumo10g01507 . Pvu9g0414 . . . Seca4g02200 . . . . . Sto9g2664 Sto5g1382 . . . . . . Vian4g01264 . Vifa2g02976 . . . Viun9g02011 . Vivi3g02665 . . .
Vvi16g1243 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g03065 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1244 Acco10g2610 . Accr4g00167 . . . . . . . . . . . Alju08g0169 . . . Apr1g0585 . . . . . Bisa09g0836 . Bva12g01862 Bva06g03063 . . . . Dere04g1301 . . . Enph1g1875 . Glsi08g0880 . . . . . . . . . Lal17g0634 Lal4g0550 Lal21g0604 . . . Lan15g0581 Lan15g0581 Lan15g0581 . . . . . . . Lele01g0138 Lele02g0138 Lele03g0145 Lele04g0136 . . . . Lja1g4694 . . . Mepo3g06666 . . . Mibi05g0142 . . . . . Phco7g01537 . Prci15g0209 . Psa5g1653 Psa6g0845 . . . . . . . . Pvu9g0413 . . . . . . . . . Sto9g2666 Sto5g1380 . . Trre5g04080 . . . . . . . Vimu10g01982 . . . Vivi3g02667 . . .
Vvi16g1245 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g01864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1246 . . . . . . . . . . . . . . . . . . Apr1g0586 . . . . . . . Bva12g01865 Bva06g03061 . . . . . . . . . . . . . . . . . . . . Lal17g0633 Lal4g0549 . . . . Lan15g0582 Lan15g0582 . . . . . . . . . . . . . . . . Lja1g4695 . . . . . . . . . . . Phac9g01257 . Phco7g01534 . . . Psa5g1654 . . . . . . . Pumo10g01501 . Pvu9g0408 . Rops10g02202 . Seca4g02206 . . . . . . Sto5g1379 . . . . . . Vian4g01273 . Vifa2g02973 . . . Viun9g02017 . Vivi3g02671 . . .
Vvi16g1247 . . . . . . . . . . . . . . . . . . Apr1g0587 . . . . . . . Bva12g01867 Bva06g03059 . . . . . . . . . . . . . . . . . . . . Lal17g0632 . Lal21g0603 . . . Lan15g0583 . Lan15g0583 . . . . . . . . . . . . . . . Lja1g4697 . . . . . . . . . . . . . . . . . Psa5g1655 . . . . . . . . . . . . . . . . . . . Sto9g2668 Sto5g1377 . . . . . . . . . . . . . . . . . .
Vvi16g1248 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g03058 . . . . . . . . Enph1g1873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01528 . Prci15g0216 . Psa5g1659 . . . . . . . . . Pvu9g0406 . . . . . . . . . . . . . . . . . . . . . . . . . Vivi3g02673 . . .
   
Previous Page 2334 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi16g1239 Chr16 21066484 21076169 -
Bva Bva12g01856 Chr12 15033490 15046948 -
Sto Sto9g2660 Chr9 28780976 28781528 -
Vvi Vvi16g1240 Chr16 21079042 21080875 +
Acco Acco10g2617 Chr10 36951534 36953029 -
Accr Accr4g00164 Chr4 1724382 1725881 +
Adu Adu10g01602 Chr10 70595949 70598230 +
Alju Alju08g0166 Chr08 1293401 1294923 +
Apr Apr1g0581 Chr1 7077504 7079524 +
Arst Arst10g02073 Chr10 69726746 69728953 +
Bisa Bisa09g0832 Chr09 12042476 12043946 +
Bva Bva12g01482 Chr12 12690824 12692963 +
Dere Dere04g1306 Chr04 14835060 14836625 -
Enph Enph1g1881 Chr1 43625424 43628543 -
Glsi Glsi08g0876 Chr08 6533321 6534825 +
Lal Lal4g0552 Chr4 4011015 4013691 -
Lal Lal21g0605 Chr21 4558901 4561864 -
Lapu Lapu9g01258 Chr9 26550667 26552800 +
Lele Lele01g0135 Chr01 802673 803734 +
Lele Lele02g0135 Chr02 779059 780122 +
Lele Lele03g0142 Chr03 766745 768253 +
Lele Lele04g0134 Chr04 772137 774323 +
Lja Lja1g4688 Chr1 61906740 61909007 +
Mibi Mibi05g0137 Chr05 1524443 1526010 +
Phco Phco7g01542 Chr7 14638878 14640555 -
Pumo Pumo10g01509 Chr10 20000808 20002894 -
Pvu Pvu9g0416 Chr9 8079544 8081536 -
Rops Rops10g02207 Chr10 39617091 39618838 -
Seca Seca4g02196 Chr4 37221034 37223811 +
Sto Sto9g2663 Chr9 28791384 28792926 +
Sto Sto5g1384 Chr5 9476444 9478837 -
Vian Vian4g01260 Chr4 25533232 25534825 +
Vifa Vifa2g02978 Chr2 850831781 850833383 -
Vimu Vimu10g01505 Chr10 16584198 16586643 -
Viun Viun9g02009 Chr9 29906914 29908969 +
Vivi Vivi3g02662 Chr3 44676217 44678144 +
Vvi Vvi16g1241 Chr16 21082551 21083135 -
Vvi Vvi16g1242 Chr16 21085032 21085418 +
Acco Acco10g2616 Chr10 36946779 36947213 -
Adu Adu10g01610 Chr10 71309188 71314083 +
Alju Alju08g0167 Chr08 1296049 1296471 +
Apr Apr1g0583 Chr1 7086923 7087282 +
Arst Arst10g02080 Chr10 70439235 70442060 +
Bisa Bisa09g0833 Chr09 12061880 12062281 +
Bva Bva12g01484 Chr12 12695021 12695863 +
Enph Enph1g1880 Chr1 43621822 43622313 -
Glsi Glsi08g0878 Chr08 6538699 6539106 +
Lal Lal17g0636 Chr17 4507561 4507914 -
Lan Lan15g0579 Chr15 13186129 13186725 +
Lapu Lapu9g01259 Chr9 26560612 26561001 +
Lele Lele01g0136 Chr01 805805 806245 +
Lele Lele03g0143 Chr03 770317 770757 +
Lja Lja1g4691 Chr1 61978550 61978891 +
Mibi Mibi05g0139 Chr05 1533432 1533839 +
Phac Phac9g01246 Chr9 9789265 9790683 +
Phco Phco7g01540 Chr7 14627033 14629369 -
Psa Psa5g1651 Chr5 129589058 129590111 +
Pumo Pumo10g01507 Chr10 19978663 19979716 -
Pvu Pvu9g0414 Chr9 8068937 8069326 -
Seca Seca4g02200 Chr4 37241514 37241915 +
Sto Sto9g2664 Chr9 28796709 28797116 +
Sto Sto5g1382 Chr5 9471520 9471924 -
Vian Vian4g01264 Chr4 25558668 25559066 +
Vifa Vifa2g02976 Chr2 849783022 849783405 -
Viun Viun9g02011 Chr9 29965716 29966576 +
Vivi Vivi3g02665 Chr3 44699346 44700042 +
Vvi Vvi16g1243 Chr16 21086956 21088971 -
Bva Bva06g03065 Chr06 18959353 18961786 +
Vvi Vvi16g1244 Chr16 21090159 21092605 -
Acco Acco10g2610 Chr10 36927559 36929076 +
Accr Accr4g00167 Chr4 1737736 1738902 -
Alju Alju08g0169 Chr08 1308287 1309397 -
Apr Apr1g0585 Chr1 7104263 7105101 -
Bisa Bisa09g0836 Chr09 12090703 12092361 -
Bva Bva12g01862 Chr12 15065997 15067892 -
Bva Bva06g03063 Chr06 18956526 18958339 +
Dere Dere04g1301 Chr04 14783892 14787779 +
Enph Enph1g1875 Chr1 43600634 43602148 +
Glsi Glsi08g0880 Chr08 6549830 6551428 -
Lal Lal17g0634 Chr17 4495584 4497805 +
Lal Lal4g0550 Chr4 3996753 3998415 +
Lal Lal21g0604 Chr21 4553046 4554809 +
Lan Lan15g0581 Chr15 13195517 13197279 -
Lan Lan15g0581 Chr15 13195517 13197279 -
Lan Lan15g0581 Chr15 13195517 13197279 -
Lele Lele01g0138 Chr01 812740 813890 -
Lele Lele02g0138 Chr02 787553 788681 -
Lele Lele03g0145 Chr03 776023 777823 -
Lele Lele04g0136 Chr04 782376 784210 -
Lja Lja1g4694 Chr1 62033803 62035181 -
Mepo Mepo3g06666 Chr3 80503858 80505302 +
Mibi Mibi05g0142 Chr05 1540951 1542425 -
Phco Phco7g01537 Chr7 14615471 14616258 -
Prci Prci15g0209 Chr15 1439330 1440691 -
Psa Psa5g1653 Chr5 129620625 129622340 -
Psa Psa6g0845 Chr6 29725302 29727800 -
Pvu Pvu9g0413 Chr9 8065327 8066453 -
Sto Sto9g2666 Chr9 28804583 28818871 -
Sto Sto5g1380 Chr5 9452322 9453182 +
Trre Trre5g04080 Chr5 42413201 42414372 +
Vimu Vimu10g01982 Chr10 28858249 28859033 +
Vivi Vivi3g02667 Chr3 44715055 44716147 -
Vvi Vvi16g1245 Chr16 21098284 21098631 -
Bva Bva12g01864 Chr12 15075930 15076259 -
Vvi Vvi16g1246 Chr16 21102338 21104787 +
Apr Apr1g0586 Chr1 7115371 7119747 +
Bva Bva12g01865 Chr12 15079306 15082924 +
Bva Bva06g03061 Chr06 18947370 18950562 -
Lal Lal17g0633 Chr17 4488519 4493153 -
Lal Lal4g0549 Chr4 3981687 3990035 -
Lan Lan15g0582 Chr15 13199321 13204166 +
Lan Lan15g0582 Chr15 13199321 13204166 +
Lja Lja1g4695 Chr1 62064175 62068097 +
Phac Phac9g01257 Chr9 9824267 9828647 +
Phco Phco7g01534 Chr7 14581752 14585750 -
Psa Psa5g1654 Chr5 129641734 129644699 +
Pumo Pumo10g01501 Chr10 19929870 19934183 -
Pvu Pvu9g0408 Chr9 8026834 8029199 -
Rops Rops10g02202 Chr10 39564156 39568667 -
Seca Seca4g02206 Chr4 37327181 37331569 +
Sto Sto5g1379 Chr5 9435231 9443711 -
Vian Vian4g01273 Chr4 25689674 25693241 +
Vifa Vifa2g02973 Chr2 848712933 848715396 -
Viun Viun9g02017 Chr9 30008130 30012284 +
Vivi Vivi3g02671 Chr3 44721315 44724342 +
Vvi Vvi16g1247 Chr16 21112035 21114675 +
Apr Apr1g0587 Chr1 7128745 7132284 +
Bva Bva12g01867 Chr12 15089738 15093229 +
Bva Bva06g03059 Chr06 18935673 18939178 -
Lal Lal17g0632 Chr17 4480252 4484113 -
Lal Lal21g0603 Chr21 4537727 4544491 -
Lan Lan15g0583 Chr15 13217545 13221215 +
Lan Lan15g0583 Chr15 13217545 13221215 +
Lja Lja1g4697 Chr1 62124600 62129726 +
Psa Psa5g1655 Chr5 129744004 129747324 +
Sto Sto9g2668 Chr9 28826197 28832703 +
Sto Sto5g1377 Chr5 9419653 9429144 -
Vvi Vvi16g1248 Chr16 21116831 21120080 +
Bva Bva06g03058 Chr06 18931896 18934909 -
Enph Enph1g1873 Chr1 43575043 43579871 -
Phco Phco7g01528 Chr7 14501026 14505597 -
Prci Prci15g0216 Chr15 1467246 1471356 +
Psa Psa5g1659 Chr5 129988746 129992699 -
Pvu Pvu9g0406 Chr9 7995071 7999435 -
Vivi Vivi3g02673 Chr3 44745292 44748984 +
Phco Phco7g01542 Chr7 14638878 14640555 -