Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01511 ATGCCAACAAAATCATCCCGGAAGCTCTCCCATTTGCTCATTTTCTTTACATTCTTCTCTTGCTCTTTCTCATACACATTCACCATAATCAACAACTGCCCACATACTATATGGCCTGGTACACTTGCCGGTTCAGGGAGTCCTCCACTTGCAACAACTGGATTCCGGTTAGACACGGGTCAAAGCATCAAACTCACGACTGTTCCCGGTTGGTCAGGACGGATATGGGCAAGGACTGGTTGCAAATTTGATGCATCAGGAGTTGGCAAATGCCAAACAGGTGACTGTGGGGGAAGGCTGGAATGTGAGGGAAATGGTGCTGCTCCTCCTACCTCACTGTTTGAGATAACACTTGGTGCAGACAATGGACAAGACTACTATGATGTTAGCATGGTAGATGGCTACAATTTGCCATTACTCGCTCTACCACGAGGTGTATATGGTGGTGCCTGTAATGCCACAGGTTGTATTACTGATATTAACAGAGGTTGTCCAAGAGAACTTCAAGTACTAGGAGGTGATCCAAACCAACAGGTAGTCGGGTGTAGGAGTGCTTGCGAGGCATTCAAGTCAGACAAGTATTGCTGCAGTGGAGCATTCGCTAATCCAAATACATGCCAGCCTTCCTATTATTCAACCATTTTCAAGAAGGCTTGTCCAAGAGCTTATAGCTATGCATTCGATGATGGCACCAGCACTTTCACTTGCAAAGCGTACGAATATGATATTGTTTTCTGTCCCAACAGCAATGGGTATATACTATATACATCATCTCACTCAAAATTCGATTGA 792 0.4495 MPTKSSRKLSHLLIFFTFFSCSFSYTFTIINNCPHTIWPGTLAGSGSPPLATTGFRLDTGQSIKLTTVPGWSGRIWARTGCKFDASGVGKCQTGDCGGRLECEGNGAAPPTSLFEITLGADNGQDYYDVSMVDGYNLPLLALPRGVYGGACNATGCITDINRGCPRELQVLGGDPNQQVVGCRSACEAFKSDKYCCSGAFANPNTCQPSYYSTIFKKACPRAYSYAFDDGTSTFTCKAYEYDIVFCPNSNGYILYTSSHSKFD 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01511 263 PIRSF PR5 3 262 IPR001938 -
Pumo10g01511 263 Gene3D Thaumatin 25 247 IPR037176 -
Pumo10g01511 263 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Pumo10g01511 263 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Pumo10g01511 263 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Pumo10g01511 263 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Pumo10g01511 263 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Pumo10g01511 263 Pfam Thaumatin family 31 247 IPR001938 -
Pumo10g01511 263 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Pumo10g01511 263 ProSiteProfiles Thaumatin family profile. 24 249 IPR001938 -
Pumo10g01511 263 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Pumo10g01511 263 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Pumo10g01511 263 PANTHER OS03G0233200 PROTEIN 15 247 IPR001938 -
Pumo10g01511 263 CDD TLP-PA 26 246 - -
Pumo10g01511 263 SMART tha2 27 247 IPR001938 -
Pumo10g01511 263 ProSitePatterns Thaumatin family signature. 87 102 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01511 Pumo-Chr10 20019514 20020729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01511 6 248 Receptor kinase-like Gene Family AT5G38280 45.122 3.48e-71 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01511 - - var:108329898 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01511 10 20019514 20020729 Pumo10g01511 10 20019514 20020729 ECH