Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4684 ATGCCAACTAAGGCATCCTGGAAGCTCCTTAGTTCCCTTATTCTGTTTAGTTTCTTCTCTTGCTCTTTTTCTTCCACATTCACCATATTCAACAACTGCCCCTATACTATATGGCCCGGTACCCTCGCCGGATCTGTAAGCCCTCGACTTTCAACGACCGGATTCCGGTTGGACTCCGGCCAAAGCGTCAAACTCACCACTGTTCCGGGGTGGTCAGGACGGATATGGGCAAGGACTGGCTGCAAATTTGATGCAACAGGAGTTGGCAAATGCCAAACAGGTGACTGTGGAGGAAGGCTGGAGTGTGAAGGAAGTGGTGCTGCTCCTCCTACCTCACTGTTTGAGATAACACTCGGTGCAGGCGGTGGACAAGACTTCTATGATGTAAGCATGGTAGATGGCTACAATTTGCCATTAGTTGCTCTACCACGAGGTGCATATAGTGGTGCCTGTAATGCAACAGGTTGTATGACAGATATCAATAGAGGTTGCCCTAAAGAACTTCAAGTAGTGGGAGGCGATGGAAACCAGAGTGTAATCGGGTGTAGGAGTGCTTGTGAGGCATTGAAGTTGGATAAGTACTGCTGCAGTGGAGAATTTGCAAACCCACAGACATGCCAGCCTTCTTATTACTCCACCATTTTCAAGAGGGCTTGTCCAAGTGCTTATAGCTATGCATTTGATGATGGCACCAGCACTTTCACTTGCAAAGCTAATGAATATGACATTGTTTTCTGTCCCAACACAAATGGGTACAATCTCCAACAATTTAGATCAATTTCCCTTCTCTTTCAATTCATTACTTATGCTTACTTTCAATAA 822 0.4586 MPTKASWKLLSSLILFSFFSCSFSSTFTIFNNCPYTIWPGTLAGSVSPRLSTTGFRLDSGQSVKLTTVPGWSGRIWARTGCKFDATGVGKCQTGDCGGRLECEGSGAAPPTSLFEITLGAGGGQDFYDVSMVDGYNLPLVALPRGAYSGACNATGCMTDINRGCPKELQVVGGDGNQSVIGCRSACEALKLDKYCCSGEFANPQTCQPSYYSTIFKRACPSAYSYAFDDGTSTFTCKANEYDIVFCPNTNGYNLQQFRSISLLFQFITYAYFQ* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4684 273 ProSitePatterns Thaumatin family signature. 87 102 IPR017949 -
Lja1g4684 273 PANTHER THAUMATIN-LIKE PROTEIN 1B 4 256 - -
Lja1g4684 273 PIRSF PR5 1 264 IPR001938 -
Lja1g4684 273 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lja1g4684 273 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lja1g4684 273 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Lja1g4684 273 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Lja1g4684 273 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Lja1g4684 273 Gene3D Thaumatin 25 247 IPR037176 -
Lja1g4684 273 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Lja1g4684 273 CDD TLP-PA 29 246 - -
Lja1g4684 273 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Lja1g4684 273 SMART tha2 27 247 IPR001938 -
Lja1g4684 273 PANTHER OS03G0233200 PROTEIN 4 256 IPR001938 -
Lja1g4684 273 Pfam Thaumatin family 31 247 IPR001938 -
Lja1g4684 273 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4684 Lja-Chr1 61791192 61792119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4684 6 248 Receptor kinase-like Gene Family AT5G38280 47.967 1.28e-74 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4684 - - var:108329898 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4684 1 61791192 61792119 Lja1g4684 1 61791192 61792119 ECH