Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0418 ATGTGGAAACTAACCAGTTTGCTCATTCTCTTTACATTCTTCACTTGCTCTTGCTCATACACATTCACCATCATCAACAACTGTCCACACACTATATGGCCTGGTACACTTGCAGGTTCAGGGAGTCCTCCACTTGCAACAACCGGATTCCGGTTGGACATGCGTGAAAGCATCAAACTTACGACTGTCCCAGGTTGGTCAGGACGGATATGGGCAAGGACTGGTTGTAACTTTGATACAACAGGAGTTGGCAGATGCCAAACGGGTGACTGTGGAGGAAGGCTGGAGTGTGAGGGAAATGGTGCTGCTGCTCCTACCTCACTGTTTGAGATAACACTTGGTGCAGGCAATGGACAAGACTACTATGATGTTAGCTTGGTAGATGGTTACAATTTGCCATTACTGGCTCTACCACGAGGTGTATATGGTGGCGCCTGTAATGCCACAGGTTGTATTACTGATATCAACAGAGGTTGCCCAACAGAACTTCAAGTATTAGGTGTCGAAAACCAACGGGTTGTTGTTGGTTGTAGGAGTGCTTGTGAGGCATTCAAGTTGGACAAGTATTGCTGCAGTGGAGAATTTGCAAATCCAAATACATGTCATCCTTCCTATTATTCAACCTTATTCAAGAAGGCTTGTCCAAGAGCTTATAGCTATGCGTTTGACGATGGCACCAGCACTTTCACTTGCAAAGCATACGAATACGATATTGTTTTCTGTCCCAACAGCAACGGGTACACACCGTACATC 753 0.4568 MWKLTSLLILFTFFTCSCSYTFTIINNCPHTIWPGTLAGSGSPPLATTGFRLDMRESIKLTTVPGWSGRIWARTGCNFDTTGVGRCQTGDCGGRLECEGNGAAAPTSLFEITLGAGNGQDYYDVSLVDGYNLPLLALPRGVYGGACNATGCITDINRGCPTELQVLGVENQRVVVGCRSACEAFKLDKYCCSGEFANPNTCHPSYYSTLFKKACPRAYSYAFDDGTSTFTCKAYEYDIVFCPNSNGYTPYI 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0418 251 PRINTS Pathogenesis-related protein signature 21 33 IPR001938 -
Pvu9g0418 251 PRINTS Pathogenesis-related protein signature 69 80 IPR001938 -
Pvu9g0418 251 PRINTS Pathogenesis-related protein signature 82 111 IPR001938 -
Pvu9g0418 251 PRINTS Pathogenesis-related protein signature 120 136 IPR001938 -
Pvu9g0418 251 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Pvu9g0418 251 Gene3D Thaumatin 20 242 IPR037176 -
Pvu9g0418 251 PANTHER THAUMATIN-LIKE PROTEIN 1B 5 245 - -
Pvu9g0418 251 CDD TLP-PA 21 241 - -
Pvu9g0418 251 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Pvu9g0418 251 ProSitePatterns Thaumatin family signature. 82 97 IPR017949 -
Pvu9g0418 251 Pfam Thaumatin family 26 242 IPR001938 -
Pvu9g0418 251 PANTHER OS03G0233200 PROTEIN 5 245 IPR001938 -
Pvu9g0418 251 PIRSF PR5 1 250 IPR001938 -
Pvu9g0418 251 SUPERFAMILY Osmotin, thaumatin-like protein 21 243 IPR037176 -
Pvu9g0418 251 ProSiteProfiles Thaumatin family profile. 19 244 IPR001938 -
Pvu9g0418 251 SMART tha2 22 242 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0418 Pvu-Chr9 8092445 8093296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0418 4 243 Receptor kinase-like Gene Family AT5G38280 45.679 2.88e-70 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0418 - - var:108329898 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0418 9 8092445 8093296 Pvu9g0418 9 8092445 8093296 ECH
Pvu8g1948 8 49202137 49203736 Pvu9g0418 9 8092445 8093296 PCT