Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02006 ATGACAGCAAAGACATCCTGGAACCTAACCAGTTTGGTCATTCTCTTTACATTCTTGACTTGCTCTTTCTCAAACACATTCACCATCATCAACAACTGTCCACAAACTATATGGCCTGGTACCCTTGCAGGTTCAGGGAGTCCTCCACTTGCACCAACCGGATTCCGGTTGGACACGGGTCAAAGCATCAAACTTACGACTGTCCCAGGTTGGTCAGGACGGATATGGGCAAGGACTGGTTGTAAATTTGATGCAACAGGTGTTGGAAGATGCCAAACAGGTGACTGTGGAGGAAGGCTGGAATGTGAGGGAAATGGTGCTGCTCCTCCTACCTCACTGTTTGAGATAACATTTGGTGCAGGCAATGGACAAGACTACTATGATGTTAGCATGGTAGATGGTTACAATTTGCCATTACCCGCTCTGCCACGAGGTGCACATGGTGGTGCCTGCAATGCCACAGGTTGTATTACTGATATCAACAGAGGTTGCCCGGCAGAACTTCAAGTATTAGGAGGTGTCCCAAATCAAGGGGTAGTGGGGTGTAGGAGTGCTTGTGAGGCATTCAAGTTGGATAAGTATTGCTGCAGTGGAGAATTTGCAAATCCAAATACATGCCAGCCTTCATATTATTCAACCTTATTCAAGAAAGCTTGTCCAAGAGCTTATAGCTATGCGTTTGACGATGGCACCAGCACTTTCACTTGCAAAGCATATGAATACGATATTGTTTTCTGTCCCAACAGCAACGGGTACACACCAAATCCTGCATCTCCTCCTCCACCAATTAGACAGCCCTATTGGAAGCATCACCAGGTCACTTCCTCGTCAAATATTTTATTACCCTTTCCAGCGCCAATCTTTCTCTTGGTTCTCACTCTTACTTTCTTGGCATTTGTAAGACACGGCCAATGA 915 0.4601 MTAKTSWNLTSLVILFTFLTCSFSNTFTIINNCPQTIWPGTLAGSGSPPLAPTGFRLDTGQSIKLTTVPGWSGRIWARTGCKFDATGVGRCQTGDCGGRLECEGNGAAPPTSLFEITFGAGNGQDYYDVSMVDGYNLPLPALPRGAHGGACNATGCITDINRGCPAELQVLGGVPNQGVVGCRSACEAFKLDKYCCSGEFANPNTCQPSYYSTLFKKACPRAYSYAFDDGTSTFTCKAYEYDIVFCPNSNGYTPNPASPPPPIRQPYWKHHQVTSSSNILLPFPAPIFLLVLTLTFLAFVRHGQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02006 304 PIRSF PR5 1 297 IPR001938 -
Viun9g02006 304 ProSiteProfiles Thaumatin family profile. 24 249 IPR001938 -
Viun9g02006 304 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Viun9g02006 304 ProSitePatterns Thaumatin family signature. 87 102 IPR017949 -
Viun9g02006 304 CDD TLP-PA 26 246 - -
Viun9g02006 304 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Viun9g02006 304 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Viun9g02006 304 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Viun9g02006 304 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Viun9g02006 304 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Viun9g02006 304 SMART tha2 27 247 IPR001938 -
Viun9g02006 304 Pfam Thaumatin family 31 247 IPR001938 -
Viun9g02006 304 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Viun9g02006 304 PANTHER OS03G0233200 PROTEIN 14 247 IPR001938 -
Viun9g02006 304 Gene3D Thaumatin 25 247 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02006 Viun-Chr9 29860166 29861777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02006 1 280 Receptor kinase-like Gene Family AT5G38280 41.404 2.63e-70 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02006 - - vum:124820392 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02006 9 29860166 29861777 Viun9g02006 9 29860166 29861777 ECH
Viun8g01718 8 28122240 28123878 Viun9g02006 9 29860166 29861777 PCT