Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0579 ATGCCAACAAAGCCATCTTGGAAGCACAACAGTTTGCTTATTCTCTTTACATTCTTCTCTTGTTCTTTCTCATACACATTCACCATAATCAACAACTGCCCCCATACTATATGGCCTGGTACTCTTGCAGGTTCAGGGAGTCCTCGGCTTTCGACGACCGGATTCCAGTTGGACACGGCCCAAAGCATCAAACTTACAACTGTTCCAGGATGGTCAGGACGGATATGGGCAAGAACAGGTTGCAAATTTGATGCAACAGGAATTGGCAAATGCCAAACAGGTGACTGTGGGGGAAGGCTGGAATGTGATGGGAATGGTGCTGCTCCTCCTACCTCACTGTTTGAGATAACGCTTGGTGCAGGCAATGGACAAGACTACTACGACGTCAGCATGGTAGATGGCTACAATTTGCCATTACTTGCTATGCCACGAGGTGTATATGGTGGTGCCTGCAATGCCACAGGTTGTGTTGTTGATATCAACAAAGGTTGCCCAAAAGAACTACAAGTAGTAGGAGAAGATCGATACCAAGGTGTAGTTGGGTGTAGGAGTGCTTGCGAAGCATTCAAGTTGGACAAGTATTGCTGCAGTGGAGAATTTGCCAATCCAAATACATGCCAGCCTTCCTATTATTCAACTATTTTCAAGAAGGCCTGTCCAAGAGCTTATAGCTATGCATTTGATGATGGCACCAGCACTTTCACTTGTAAAGCTTATGAATATGACATTGTTTTCTGTCCCTACAGCAATAGGATGAAAAAACCAAATATTGCATCTCCTCCTCCACCGAGTAAACAGCCCTATCGGAAGCATCAGCAGGTCACTTCATCATCAAGCATTCTATTACCCTTTCCAGAGCTAATTTTTCTCTCGGTTTCTAGTCTTACTTTCTTGGCATTTCCAAAACACGGCCAGTGA 918 0.4477 MPTKPSWKHNSLLILFTFFSCSFSYTFTIINNCPHTIWPGTLAGSGSPRLSTTGFQLDTAQSIKLTTVPGWSGRIWARTGCKFDATGIGKCQTGDCGGRLECDGNGAAPPTSLFEITLGAGNGQDYYDVSMVDGYNLPLLAMPRGVYGGACNATGCVVDINKGCPKELQVVGEDRYQGVVGCRSACEAFKLDKYCCSGEFANPNTCQPSYYSTIFKKACPRAYSYAFDDGTSTFTCKAYEYDIVFCPYSNRMKKPNIASPPPPSKQPYRKHQQVTSSSSILLPFPELIFLSVSSLTFLAFPKHGQ* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0579 305 Pfam Thaumatin family 31 247 IPR001938 -
Apr1g0579 305 ProSitePatterns Thaumatin family signature. 87 102 IPR017949 -
Apr1g0579 305 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Apr1g0579 305 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Apr1g0579 305 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Apr1g0579 305 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Apr1g0579 305 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Apr1g0579 305 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Apr1g0579 305 PANTHER THAUMATIN-LIKE PROTEIN 1B 6 263 - -
Apr1g0579 305 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Apr1g0579 305 CDD TLP-PA 26 246 - -
Apr1g0579 305 PANTHER OS03G0233200 PROTEIN 6 263 IPR001938 -
Apr1g0579 305 SMART tha2 27 247 IPR001938 -
Apr1g0579 305 Gene3D Thaumatin 25 247 IPR037176 -
Apr1g0579 305 ProSiteProfiles Thaumatin family profile. 24 249 IPR001938 -
Apr1g0579 305 PIRSF PR5 2 296 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0579 Apr-Chr1 7062394 7063538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0579 12 276 Receptor kinase-like Gene Family AT5G38280 44.776 4.32e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0579 - - aprc:113850677 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0579 1 7062394 7063538 Apr1g0579 1 7062394 7063538 ECH
Apr9g1062 9 20019866 20022447 Apr1g0579 1 7062394 7063538 PCT