Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0553 ATGTCATCATGGAAGTTCCCTAGTTTGCTTATTCTCTTTACATTATTCTCTTGCTCCTTCTCCTACACATTCACCATAACCAACAACTGTGCATATACCATATGGCCTGGTACACTTGCTGGTTCTGCGAGTCCTCGGCTTTCGACAACCGGATTTCGATTGGATTCAGGCCAAAGTGTTAAACTTACAACTGTTCCAGGATGGTCAGGACGGATATGGGGAAGAACTGGTTGCAAATTTGACACAATGGGAATTGGAAAATGCGAAACAGGTGATTGTGGGGGAAAATTGGAGTGTGATGGAAATGGTGCAGCTGCTCCTACCTCATTGTTTGAGATAACACTTGGTGCAGGCAATGGACAAGACTTCTATGATGTTAGTATGGTAGATGGCTACAATTTGCCAATACTTGCTCTACCAAGAGGTGTATATGGTGGTGCCTGTAATGCCACAGGTTGTATGACTGATATTAACTTAGGTTGCCCTAAAGAACTTCAAGTGTTAGGTAGCAATGGATACCAAGGTGGTGGTGTAGTTGGGTGTAGGAGTGCTTGTGAGGCATTCAAATTGGATAAGTACTGCTGCAGTGGAGAATTTGCCAACCCAAACACATGCCAGCCCTCCTATTATTCCACCATTTTCAAGAGAGCTTGTCCAAGAGCTTATAGCTATGCATTTGATGATGGCACCAGCACTTTCACTTGCAAGGCTTCGGAATATATCATTGTTTTCTGTCCCAACATCAATGGGATTCAAAAACCAAATCCAGCATCTCCACCTCCACCAATTAGACGACCCCATCCAAATGATCACATGGTTCCTTCCTCATCAAATATTATTCTCTTACCATTTCCAGTGCCAATCTTGCTCTTGGTTATTAGTCTCGGTTTCTCAGTTTTTGTAGAGAAGCCATGGCGCCAGTGA 924 0.4351 MSSWKFPSLLILFTLFSCSFSYTFTITNNCAYTIWPGTLAGSASPRLSTTGFRLDSGQSVKLTTVPGWSGRIWGRTGCKFDTMGIGKCETGDCGGKLECDGNGAAAPTSLFEITLGAGNGQDFYDVSMVDGYNLPILALPRGVYGGACNATGCMTDINLGCPKELQVLGSNGYQGGGVVGCRSACEAFKLDKYCCSGEFANPNTCQPSYYSTIFKRACPRAYSYAFDDGTSTFTCKASEYIIVFCPNINGIQKPNPASPPPPIRRPHPNDHMVPSSSNIILLPFPVPILLLVISLGFSVFVEKPWRQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0553 307 CDD TLP-PA 23 245 - -
Lal4g0553 307 Gene3D Thaumatin 22 246 IPR037176 -
Lal4g0553 307 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Lal4g0553 307 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Lal4g0553 307 PRINTS Pathogenesis-related protein signature 84 113 IPR001938 -
Lal4g0553 307 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Lal4g0553 307 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Lal4g0553 307 ProSiteProfiles Thaumatin family profile. 21 246 IPR001938 -
Lal4g0553 307 Pfam Thaumatin family 28 246 IPR001938 -
Lal4g0553 307 ProSitePatterns Thaumatin family signature. 84 99 IPR017949 -
Lal4g0553 307 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lal4g0553 307 SUPERFAMILY Osmotin, thaumatin-like protein 23 247 IPR037176 -
Lal4g0553 307 PANTHER THAUMATIN-LIKE PROTEIN 1B 8 262 - -
Lal4g0553 307 SMART tha2 24 246 IPR001938 -
Lal4g0553 307 PANTHER OS03G0233200 PROTEIN 8 262 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0553 Lal-Chr4 4021867 4023820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0553 8 258 Receptor kinase-like Gene Family AT5G38280 45.769 1.56e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0553 - - aprc:113850677 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0553 4 4021867 4023820 Lal4g0553 4 4021867 4023820 ECH