Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01511 TCAGGGAGTCCTCCACTTGCAACAACCGGATTCCGGTTGGACATGGGTCAAAGCATCAAACTTACGACTGTCCCGGGTTGGTCAGGACGGATATGGGCAAGGACTGGTTGTAAATTTGATACAGCCGGAATTGGCAGATGCCAAACAGGTGACTGTGGAGGAAGGCTGGAATGTGAGGGAAATGGTGCTGCTCCTCCTACCTCACTGTTTGAGATAACACTTGGTGCAGGCAATGGACAAGATTACTATGATGTTAGCATGGTAGATGGTTACAATTTGCCATTACTTGCTCTACCACGAGGTGTACATGGTGGTGCCTGTAATGCGACAGGTTGTATTACTGATATTAACAGAGGTTGCCCAGCAGAACTTCAAGTATTAGGAGGGGTTCAAAATCAAGGGGTAGTGGGGTGTAGGAGTGCTTGTGAGGCATTCAAGTTGGATAAGTACTGCTGCAGTGGAGAATTTGCAAATCCAAATACATGCCAGCCTTCATATTATTCAACCTTATTCAAGAAGGCTTGTCCAAGAGCTTATAGCTATGCGTTTGACGATGGCACCAGCACTTTCACTTGCAAAGCATACGAATACGATATTGTTTTCTGTCCCAACAGCAACGGGTACACACTATACATCATCGCACTTATTTAA 651 0.4562 SGSPPLATTGFRLDMGQSIKLTTVPGWSGRIWARTGCKFDTAGIGRCQTGDCGGRLECEGNGAAPPTSLFEITLGAGNGQDYYDVSMVDGYNLPLLALPRGVHGGACNATGCITDINRGCPAELQVLGGVQNQGVVGCRSACEAFKLDKYCCSGEFANPNTCQPSYYSTLFKKACPRAYSYAFDDGTSTFTCKAYEYDIVFCPNSNGYTLYIIALI 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01511 216 Gene3D Thaumatin 1 203 IPR037176 -
Vimu10g01511 216 ProSiteProfiles Thaumatin family profile. 1 205 IPR001938 -
Vimu10g01511 216 FunFam Thaumatin-like protein 1a 1 203 - -
Vimu10g01511 216 ProSitePatterns Thaumatin family signature. 43 58 IPR017949 -
Vimu10g01511 216 PRINTS Pathogenesis-related protein signature 81 97 IPR001938 -
Vimu10g01511 216 PRINTS Pathogenesis-related protein signature 193 202 IPR001938 -
Vimu10g01511 216 PRINTS Pathogenesis-related protein signature 30 41 IPR001938 -
Vimu10g01511 216 PRINTS Pathogenesis-related protein signature 9 18 IPR001938 -
Vimu10g01511 216 PRINTS Pathogenesis-related protein signature 43 72 IPR001938 -
Vimu10g01511 216 PANTHER OS03G0233200 PROTEIN 2 203 IPR001938 -
Vimu10g01511 216 SMART tha2 1 203 IPR001938 -
Vimu10g01511 216 Pfam Thaumatin family 3 203 IPR001938 -
Vimu10g01511 216 CDD TLP-PA 1 202 - -
Vimu10g01511 216 PIRSF PR5 1 212 IPR001938 -
Vimu10g01511 216 SUPERFAMILY Osmotin, thaumatin-like protein 4 204 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01511 Vimu-Chr10 16630611 16631360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01511 6 204 Receptor kinase-like Gene Family AT5G38280 47.525 2.46e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01511 - - var:108329898 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01511 10 16630611 16631360 Vimu10g01511 10 16630611 16631360 ECH
Vimu1g01568 1 14785835 14787177 Vimu10g01511 10 16630611 16631360 PCT