Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02212 ATGCCAACAAAGACATCCTGGAAGATCCCCAGTTCCCTTGTTCTCTTTACATTCTTCTCTTGCTCTTGCTCTTACACATTCACCATAATCAACAACTGCCCCAATACTATATGGCCTGGTACACTCGCCGGCTCAGGGAGCCCTCCACTTTCAACAACCGGATTCCGGTTGGACTCAGGCCAAAGTGTCAAACTTACGACTGTTCCAGGATGGTCTGGAAGGATATGGGCAAGGACTGATTGCAAATTTGATGCAACAGGAATTGGCAAATGCCAAACAGGTGACTGTGGAGGAAGGCTGGAATGTGATGGAAATGGTGCTGCTCCTCCTACTTCGCTGTTTGAGATAACCCTTGGTGCAGGCAATGGACAAGACTACTACGATGTCAGCATGGTAGATGGTTACAATTTGCCATTACTTGCTTTACCAAGAGGTGTATATGGTGGTGCCTGTAATGCCACTGGTTGTATCAATGATATCAACAGAGGTTGCCCTAAAGAACTTCAAGTAGTGGGTGGTGATGGATTCCAAAGTGTAGTTGGGTGTAGGAGTGCTTGCGAGGCATTCAAGTTGGATAAGTACTGCTGCAGTGGAGAATTTGCCAACCCACAGACTTGCCAGCCTTCCTATTATTCAACCATTTTCAAGAGGGCTTGTCCAAGAGCTTATAGCTATGCATTTGATGATGGCACAAGCACTTTCACTTGCAAAACTTATGAATATGACGTTGTGTTCTGTCCCAACAGCAGTGGGATGACAAAACCAAATCGTGCATCTCCTCCTCCACCAAATAGACCCTATCGGAAGCATCAGCAGGCCACTTCCTCATCAAATATTCTCTTACCCTTTCCGGTGCCAATCTCTCTCTTGGTTCCCGGTCTTATTTTCCTGGCATTTGTGAGACACGGCCAGTGA 915 0.4656 MPTKTSWKIPSSLVLFTFFSCSCSYTFTIINNCPNTIWPGTLAGSGSPPLSTTGFRLDSGQSVKLTTVPGWSGRIWARTDCKFDATGIGKCQTGDCGGRLECDGNGAAPPTSLFEITLGAGNGQDYYDVSMVDGYNLPLLALPRGVYGGACNATGCINDINRGCPKELQVVGGDGFQSVVGCRSACEAFKLDKYCCSGEFANPQTCQPSYYSTIFKRACPRAYSYAFDDGTSTFTCKTYEYDVVFCPNSSGMTKPNRASPPPPNRPYRKHQQATSSSNILLPFPVPISLLVPGLIFLAFVRHGQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02212 304 ProSiteProfiles Thaumatin family profile. 24 249 IPR001938 -
Rops10g02212 304 SMART tha2 27 247 IPR001938 -
Rops10g02212 304 MobiDBLite consensus disorder prediction 251 271 - -
Rops10g02212 304 Gene3D Thaumatin 25 247 IPR037176 -
Rops10g02212 304 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Rops10g02212 304 Pfam Thaumatin family 31 247 IPR001938 -
Rops10g02212 304 CDD TLP-PA 26 246 - -
Rops10g02212 304 PIRSF PR5 1 288 IPR001938 -
Rops10g02212 304 ProSitePatterns Thaumatin family signature. 87 102 IPR017949 -
Rops10g02212 304 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Rops10g02212 304 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Rops10g02212 304 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Rops10g02212 304 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Rops10g02212 304 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Rops10g02212 304 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Rops10g02212 304 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Rops10g02212 304 PANTHER OS03G0233200 PROTEIN 15 247 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02212 Rops-Chr10 39670627 39671873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02212 13 259 Receptor kinase-like Gene Family AT5G38280 45.418 7.33e-71 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02212 - - vum:124820392 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02212 10 39670627 39671873 Rops10g02212 10 39670627 39671873 ECH
Rops9g01346 9 22186507 22188171 Rops10g02212 10 39670627 39671873 PCT