Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1235 ATGCTATCCTGGAGCTTCACTTTGTTTCTCATTGCCATTTCTGTCTTATCCTCCCCATCATCTTGCACATTTACTATAACAAACAACTGCCCTCATACCATCTGGCCTGGCACACTGGCGGGTTCGGGTACGCCGCAGCTTCCTACCACTGGATTGCAATTGGAGTCTGGCCAGAGTATCAGAATTCCAACATCTCCAGGATGGTCGGGTCGAATCTGGGCGAGGACAGGTTGCACATTCGATGAGTCGGGAGCAGGCACTTGCCAGACTGGGGACTGTGGTGGGAGGCTGGAGTGTGATGGGATTGGGGCTGCTCCACCCACATCACTCTTTGAGATAACCCTAGGAGCAGGTACTGATAAAGATTTCTATGATGTTAGCTTTGTGGATGGATACAATCTCCCACTGATTGCTGTACCAAGAGGAGTTTATGGTGGCTGCAATGCTACAGGCTGTGCTTCAGACATCAACATAGGTTGTCCAAAAGAGCTTCAGGTGGTGGGGAATAGTGGAGAGGAAGGGGGGGTAGTTGCATGCAGGAGTGCTTGTGACGCATTTGGGCTGGACCAGTACTGCTGCAGTGGGGAGTTTGCAAATCCATCAACATGCCGCCCATCCTTCTATTCCAGCATCTTCAAGAGAGCTTGCCCCAGGGCTTACAGCTATGCTTTTGATGATGGCACAAGCACTTTTACATGCAAGGCTTATGAGTATGCCATCATCTTTTGTCCCAATGCCAATGGGATGAAGAGGTCGAGTGATCCACTTCCAGGTCCATTATTTCAAGGGCGGAACAATGGAGAGATCGCGGGGATGGTTTCCTCTTCAAACATCATCCTACCCTTTTCATTGTCAATCCTTCTCCTCCTCCTCCATTTACTATTATAA 888 0.4944 MLSWSFTLFLIAISVLSSPSSCTFTITNNCPHTIWPGTLAGSGTPQLPTTGLQLESGQSIRIPTSPGWSGRIWARTGCTFDESGAGTCQTGDCGGRLECDGIGAAPPTSLFEITLGAGTDKDFYDVSFVDGYNLPLIAVPRGVYGGCNATGCASDINIGCPKELQVVGNSGEEGGVVACRSACDAFGLDQYCCSGEFANPSTCRPSFYSSIFKRACPRAYSYAFDDGTSTFTCKAYEYAIIFCPNANGMKRSSDPLPGPLFQGRNNGEIAGMVSSSNIILPFSLSILLLLLHLLL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1235 295 SMART tha2 24 244 IPR001938 -
Vvi16g1235 295 PIRSF PR5 1 277 IPR001938 -
Vvi16g1235 295 FunFam THAUMATIN-LIKE PROTEIN 1 22 244 - -
Vvi16g1235 295 PANTHER OS03G0233200 PROTEIN 11 244 IPR001938 -
Vvi16g1235 295 ProSitePatterns Thaumatin family signature. 84 99 IPR017949 -
Vvi16g1235 295 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Vvi16g1235 295 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Vvi16g1235 295 PRINTS Pathogenesis-related protein signature 84 113 IPR001938 -
Vvi16g1235 295 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Vvi16g1235 295 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Vvi16g1235 295 Pfam Thaumatin family 28 244 IPR001938 -
Vvi16g1235 295 CDD TLP-PA 23 243 - -
Vvi16g1235 295 SUPERFAMILY Osmotin, thaumatin-like protein 23 245 IPR037176 -
Vvi16g1235 295 ProSiteProfiles Thaumatin family profile. 21 246 IPR001938 -
Vvi16g1235 295 Gene3D Thaumatin 22 244 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1235 Vvi-Chr16 21050459 21051593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1235 2 245 Receptor kinase-like Gene Family AT5G38280 45.968 1.15e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1235 - - vvi:100246972 578.17