Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1230 ATGGATCTGCAGAGCCATCCTCAGCCCGAGTTGGGGCGGTTGGAACAAATAGTTTCGCAATTTCTTTTGAAGAGCTTGCACATTGTACTAGACTCTAGGATCCCTTCTCTTCGGCCGGCCCGTGATCGGAGTGGTAATGTTTCGGGGATTTCTCGGGTTAGGAAGAGTGACAAATGGTTCAGTTTACAACTAGGAGACCGCCCTGCTGCTTTGGATAATTTGCATTTCTGGCATAGGAACTTGATGGATCCTATGATAATTGATATAATACTTGTTCGGGAAGGGTCAAATTCTTCATCGTCTATGGACAATGTATATAGTACTGCAGCAGTAGGGACATCGGTTGAGACTGTAATAGAGAGGTGGGTTGTTCAGTACGAGTCTCCACGGTTGATGGCTACTCCTACTGGTGAAAGTTCAGCCACCTACAAGAAAATTTACAAGAAGTTGATCATACTTTTGCGGTCACTTTATTCAACAATAAGGCTTCTTCCTGGCTATCGGGTTTTTCGGCTGCTAAGTTCATTGACTCAAAGTTACGATTTCGATATAATTTACAAGGTTTCATCATTTACTGAGCCGTTCTCAAGGGCAGAGGAGGAAGTGATGAAGCATTATAGTTTTTTGCCTGTAGAGGCCCTTTCTGGTCGCCTCTGTATATCTGTGACATATCATCAAACACTTTCTGATTTCAACCTTGAGCCCTTGACAGCGTTTCCGCCAACGATTATTACAGATTATGTTGGTAGCCCTGCTGCTGATCCTCTGAAGGCTTTCCCCTCGTCAGAGAAGGGTATTCGTGCTACTTCCTTTCCATTGCGAGGACGAGGAGTACGATCTCCGTCTTCTGCACCATTTCAACGCCCACACAGCTGGACGAGTGGTGGCCACAGAGCAGCTCCTTTTACACCAAATCAACCTCTCAGTGGGTCTCCACCGGCATTTCGCATGCCTTATATGCCATATGATCTTCCGACTCAACCTCTTGATATATATGGTCATGGGGTCCAAAACTATAGACCCCCAACCCATCAGAAGGCTACCAGTTTTGATGAGTATCAACTTTCACCTCCATTTTCGCCATCACAGTCCCCATCTCCCCCGACATACTTTTCCAGTAGTAACCCTATGTATTCTCGTTTCTCTTCAGAAACTGCTCCTGTAACTATCCCACTTCCATTGGTGGGCAGAGGCTCTAGGTACCTTTCGCCAAATTCATCTGATCCTAGTAGACATTCTCTTCCACCTCTGTCTCCCAGGAGCACAAGGCATGATCCTTCATCACAGGAGTCTCCATCGGGAAATAGGTCATTTAGAAAAACAGAAGGTTTAAGGATAGGAGAGTACTCTGGGACAACAAATAATTATTCTGGTCAGAAGGTATTGAAAGATAGCAAAGATGATTCAGGGCGGTTCTCAGGGTTGCTATCTTCCAGTGGCTCACCACGTATTGGCTTTTCAAGATGCTCTAGCAGATTATCTTTCCAGGATGACTTGGATGATTGTGACTTCTCTGGTCCTTTTGATGTGGATGATGTTGATACAACAGATTCCCATGCCAGTCAGAACCTTGATGGGAAAAGAGCCTCAGAGTTTCCTTCACTGGCATTTCCAATGACTGGAAAATCACCAGATGCTGCTGTTGGTGTTCTTGTTAACATGCTAAGGAGGGCGCCTCCTCTGCGCCAAGATCCAAGTTGTTGCTCATCCCACTCTTTGAAGACTGAACCCGAGGGAGAAGCGGGTGCAGCATCTGAATTTTTTATGGCTCGAAAGACAGCTGATGCACTGGAAGAGCTCAGGAGTTACAAAGAAATGAAAGACTTACTGCTCTCTAAGAGTGGAGCACATGTGGTTACTAGAGAAGAAACTTAA 1875 0.4549 MDLQSHPQPELGRLEQIVSQFLLKSLHIVLDSRIPSLRPARDRSGNVSGISRVRKSDKWFSLQLGDRPAALDNLHFWHRNLMDPMIIDIILVREGSNSSSSMDNVYSTAAVGTSVETVIERWVVQYESPRLMATPTGESSATYKKIYKKLIILLRSLYSTIRLLPGYRVFRLLSSLTQSYDFDIIYKVSSFTEPFSRAEEEVMKHYSFLPVEALSGRLCISVTYHQTLSDFNLEPLTAFPPTIITDYVGSPAADPLKAFPSSEKGIRATSFPLRGRGVRSPSSAPFQRPHSWTSGGHRAAPFTPNQPLSGSPPAFRMPYMPYDLPTQPLDIYGHGVQNYRPPTHQKATSFDEYQLSPPFSPSQSPSPPTYFSSSNPMYSRFSSETAPVTIPLPLVGRGSRYLSPNSSDPSRHSLPPLSPRSTRHDPSSQESPSGNRSFRKTEGLRIGEYSGTTNNYSGQKVLKDSKDDSGRFSGLLSSSGSPRIGFSRCSSRLSFQDDLDDCDFSGPFDVDDVDTTDSHASQNLDGKRASEFPSLAFPMTGKSPDAAVGVLVNMLRRAPPLRQDPSCCSSHSLKTEPEGEAGAASEFFMARKTADALEELRSYKEMKDLLLSKSGAHVVTREET* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1230 624 Gene3D HORMA domain 4 234 IPR036570 -
Vvi16g1230 624 PANTHER UNCHARACTERIZED 4 618 IPR040182 GO:0000045
Vvi16g1230 624 MobiDBLite consensus disorder prediction 272 304 - -
Vvi16g1230 624 FunFam Autophagy-related protein 13a 13 232 - -
Vvi16g1230 624 MobiDBLite consensus disorder prediction 399 479 - -
Vvi16g1230 624 MobiDBLite consensus disorder prediction 400 438 - -
Vvi16g1230 624 MobiDBLite consensus disorder prediction 352 372 - -
Vvi16g1230 624 Pfam Autophagy-related protein 13 18 227 IPR018731 GO:0006914|GO:1990316
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1230 Vvi-Chr16 21017497 21022223 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1230 K08331 - vvi:100245198 1167.14