Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0870 ATGGATGAGTGGAAGTTCCCCAGTTTTCTTCTTGTTCTCTTCATGTTCTTAACTTGTTCTTATTCTAGCACATTCACCATAACAAACAACTGCACGCATACCATATGGCCCGGTACACTCGCCGGTTCAGGCTCACCGGCACTGTCAACAACCGGGTTCCGGTTAGACTCGGGTCAGAGTGTCAAACTTACAAGTGGTCCAAGATGGTCTGGGCGGATATGGGGAAGGACTGGTTGCACATTTGATTCAAGAGGAATTGGGAAGTGCGAAACAGGTGACTGTGGGGGAAGGCTGGAATGTGATGGAAACGGTGCAGCTCCTCCCGCTTCCCTTTTCGAGATAACACTCGGTGCAGGCAATGAGCAAGACTACTACGATGTCAGCATGGTAGATGGCTATAATCTGCCACTCCTTGCTGTACCACGAGGGGCATATGGTGGTGCCTGTAATGCCACCGGTTGTGTCTCTGATATCAACTTAGATTGCCCAAAAGAGCTTCAGGTAGTAGGGGGAGATAGATACCAACGTAGTGTAGTTGGGTGTAGGAGTGCTTGCGAGGCATTTGGGTTGGATCAGTACTGCTGCAGTGGACAATTTGCCAACCCAACGACATGCCGACCGTCGTATTATTCGACCATTTTCAAGAGGGCTTGTCCAAGAGCTTATAGCTATGCATTTGATGATGGCACCAGCACTTTCACCTGCAAAGCTTCTGAATATGTCATTGTTTTCTGTCCCACCGGCAATGGGTATATACTTTCTCATCCTTTGCCATATTGTACTTGA 786 0.4835 MDEWKFPSFLLVLFMFLTCSYSSTFTITNNCTHTIWPGTLAGSGSPALSTTGFRLDSGQSVKLTSGPRWSGRIWGRTGCTFDSRGIGKCETGDCGGRLECDGNGAAPPASLFEITLGAGNEQDYYDVSMVDGYNLPLLAVPRGAYGGACNATGCVSDINLDCPKELQVVGGDRYQRSVVGCRSACEAFGLDQYCCSGQFANPTTCRPSYYSTIFKRACPRAYSYAFDDGTSTFTCKASEYVIVFCPTGNGYILSHPLPYCT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0870 261 CDD TLP-PA 24 245 - -
Glsi08g0870 261 Pfam Thaumatin family 29 246 IPR001938 -
Glsi08g0870 261 ProSitePatterns Thaumatin family signature. 85 100 IPR017949 -
Glsi08g0870 261 PANTHER OS03G0233200 PROTEIN 11 246 IPR001938 -
Glsi08g0870 261 FunFam THAUMATIN-LIKE PROTEIN 1 23 246 - -
Glsi08g0870 261 SUPERFAMILY Osmotin, thaumatin-like protein 24 247 IPR037176 -
Glsi08g0870 261 Gene3D Thaumatin 23 246 IPR037176 -
Glsi08g0870 261 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Glsi08g0870 261 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Glsi08g0870 261 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Glsi08g0870 261 PRINTS Pathogenesis-related protein signature 85 114 IPR001938 -
Glsi08g0870 261 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Glsi08g0870 261 PIRSF PR5 2 259 IPR001938 -
Glsi08g0870 261 SMART tha2 25 246 IPR001938 -
Glsi08g0870 261 ProSiteProfiles Thaumatin family profile. 22 248 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0870 Glsi-ChrGlsi08 6504630 6506582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0870 9 247 Receptor kinase-like Gene Family AT5G38280 47.521 8.52e-73 233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0870 08 6504630 6506582 Glsi08g0870 08 6504630 6506582 ECH