Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0761 . . . . . Ahy16g2981 . Aip06g03048 . . Amo06g3124 . . . . . Car04g03011 . . . . . . . . . . . . . . . . . . . . . . . Mepo4g00891 . . Mtr1g0008 . Phco2g00834 . . . . . . . . . . Trre1g00940 Tsu01g00887 . . . . . Vra6g1145
Pvu1g0762 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0763 . . . . . Ahy16g2983 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00835 . . . . . . . . . . . Tsu01g00885 . . . . . Vra6g1143
Pvu1g0764 . . . . . . . . . . . . . . . . Car04g03012 . . . . . . . . . . . . . . . . Lasa6g00823 . . . . . . Mepo4g00890 Mesa1g00941 . Mtr1g0009 . . . . . . . . . . . . Trre1g00939 . . . Vimu1g02035 . . .
Pvu1g0765 . . . . . . . . . . . . . . . . Car04g03013 . . . . . . . . . . . . . . . . . . . . . . . Mepo4g00889 Mesa1g00935 . Mtr1g0010 . Phco2g00837 . . . . . . . . . . Trre1g00938 Tsu01g00884 . . Vimu1g02033 . Vivi3g02319 Vra6g1142
Pvu1g0766 . . . . . Ahy16g2985 . . . . Amo06g3124 . . Bach3g01815 . Bva10g00198 . . . . . . . . . . . . . . . . . Lasa6g00815 . . . . . . Mepo4g00903 . . Mtr1g0774 . Phco2g00838 . Psa6g1339 Pste5g00994 . . . Spst8g01718 Ssu5g0722 . . Trre1g00945 . . . Vimu1g02023 . . Vra6g1141
Pvu1g0767 . . . . . . . . . . . . . . . . . . . Dod08g1491 . . . . Gso19g0608 . . . . . . . . Lasa6g00763 . . . . Lja1g5714 . . . . . . Phco2g00839 . . . . . . Spst8g01721 . . . . . . . Vimu1g02020 . . Vra6g1139
Pvu1g0768 . . Adu06g02642 . . Ahy16g2781 . Aip06g03131 . Amo16g3544 . . Arst6g03400 . . . . . . Dod08g1508 . . . Gma14g01384 Gso14g1189 . . . . . . . . Lasa6g00769 . . . . . . . . . . . Phco2g00840 . Psa6g0828 Pste8g02089 . . . Spst8g01722 . . . . . . . Vimu1g02015 . . Vra6g1137
Pvu1g0769 Acco05g2463 Accr3g00540 . Aed6g0945 . . . . Alju07g2431 . Amo06g2441 Apr9g0025 . . Bisa05g1244 . Car04g03027 . Dere05g2207 Dod08g1511 Enph7g1104 Glsi10g0902 . . . . . . . . . . . Lasa5g04341 Lele25g0467 Lele26g0479 Lele27g1615 Lele28g0473 . . Mepo4g00863 Mesa1g00902 Mibi08g2140 Mtr1g0030 . Phco2g00841 Prci2g0752 . . . . . . . Sto5g0657 . Trre1g00923 Tsu01g00876 . . Vimu1g02014 . . Vra6g1136
Pvu1g0770 . . Adu06g02670 . . . . . . . . . . . . . Car04g03040 . . . . . . . Gso19g0607 . . . . . . . . Lasa6g00772 . . . . . . Mepo4g00847 Mesa1g00887 . Mtr1g0048 . Phco2g00843 . Psa6g0826 Pste8g02090 . . . Spst8g01723 . . . Trre1g00909 Tsu01g00863 . . Vimu1g02012 . . Vra6g1135
   
Previous Page 77 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0761 Chr1 10050549 10051844 +
Ahy Ahy16g2981 Chr16 144656546 144657620 +
Aip Aip06g03048 Chr06 125301772 125302652 +
Amo Amo06g3124 Chr06 98380724 98384753 -
Car Car04g03011 Chr04 57939839 57940869 +
Mepo Mepo4g00891 Chr4 11559970 11560850 -
Mtr Mtr1g0008 Chr1 106767 107774 +
Phco Phco2g00834 Chr2 9680320 9681027 +
Trre Trre1g00940 Chr1 7141004 7141765 -
Tsu Tsu01g00887 Chr01 8118099 8118993 -
Vra Vra6g1145 Chr6 18368084 18369807 -
Pvu Pvu1g0762 Chr1 10071993 10073461 -
Pvu Pvu1g0763 Chr1 10111144 10125220 -
Ahy Ahy16g2983 Chr16 144762104 144768239 +
Phco Phco2g00835 Chr2 9737839 9754553 -
Tsu Tsu01g00885 Chr01 8087637 8096853 +
Vra Vra6g1143 Chr6 18201390 18230227 +
Pvu Pvu1g0764 Chr1 10132119 10134090 -
Car Car04g03012 Chr04 57989822 57998563 -
Lasa Lasa6g00823 Chr6 31252595 31261645 -
Mepo Mepo4g00890 Chr4 11529188 11540017 +
Mesa Mesa1g00941 Chr1 12554956 12565672 +
Mtr Mtr1g0009 Chr1 134767 146115 -
Trre Trre1g00939 Chr1 7113805 7123768 +
Vimu Vimu1g02035 Chr1 27988742 28003208 +
Pvu Pvu1g0765 Chr1 10134484 10139961 -
Car Car04g03013 Chr04 57999790 58002759 -
Mepo Mepo4g00889 Chr4 11526066 11527900 +
Mesa Mesa1g00935 Chr1 12513428 12516093 +
Mtr Mtr1g0010 Chr1 147884 150736 -
Phco Phco2g00837 Chr2 9756807 9765112 -
Trre Trre1g00938 Chr1 7105356 7107799 +
Tsu Tsu01g00884 Chr01 8083969 8086816 +
Vimu Vimu1g02033 Chr1 27883906 27885797 +
Vivi Vivi3g02319 Chr3 38983465 38984802 +
Vra Vra6g1142 Chr6 18157388 18172203 +
Pvu Pvu1g0766 Chr1 10177414 10181382 +
Ahy Ahy16g2985 Chr16 144787481 144797395 +
Amo Amo06g3124 Chr06 98380724 98384753 -
Bach Bach3g01815 Chr3 26476378 26478828 +
Bva Bva10g00198 Chr10 3297595 3300092 +
Lasa Lasa6g00815 Chr6 30504840 30507147 +
Mepo Mepo4g00903 Chr4 11682534 11687214 -
Mtr Mtr1g0774 Chr1 8801098 8807156 -
Phco Phco2g00838 Chr2 9788386 9791701 +
Psa Psa6g1339 Chr6 60661480 60666044 +
Pste Pste5g00994 Chr5 6521247 6529183 +
Spst Spst8g01718 Chr8 20472673 20478850 +
Ssu Ssu5g0722 Chr5 18156066 18161126 -
Trre Trre1g00945 Chr1 7193732 7197264 -
Vimu Vimu1g02023 Chr1 27742794 27750480 -
Vra Vra6g1141 Chr6 18033443 18041369 -
Pvu Pvu1g0767 Chr1 10197646 10200052 -
Dod Dod08g1491 Chr08 30991376 30994140 -
Gso Gso19g0608 Chr19 21541549 21545702 +
Lasa Lasa6g00763 Chr6 27815861 27817396 -
Lja Lja1g5714 Chr1 101078037 101081185 -
Phco Phco2g00839 Chr2 9804849 9806905 -
Spst Spst8g01721 Chr8 20631276 20633451 -
Vimu Vimu1g02020 Chr1 27693597 27695990 +
Vra Vra6g1139 Chr6 18020830 18023600 +
Pvu Pvu1g0768 Chr1 10219479 10231145 +
Adu Adu06g02642 Chr06 102380644 102386222 +
Ahy Ahy16g2781 Chr16 140927284 140933506 +
Aip Aip06g03131 Chr06 126802524 126808629 +
Amo Amo16g3544 Chr16 145438659 145444797 +
Arst Arst6g03400 Chr6 101575462 101581328 +
Dod Dod08g1508 Chr08 32029736 32051080 +
Gma Gma14g01384 Chr14 29161465 29168956 +
Gso Gso14g1189 Chr14 27663983 27671529 +
Lasa Lasa6g00769 Chr6 28062073 28066807 +
Phco Phco2g00840 Chr2 9816703 9824895 +
Psa Psa6g0828 Chr6 29106984 29112280 -
Pste Pste8g02089 Chr8 17595435 17603907 +
Spst Spst8g01722 Chr8 20636200 20649356 +
Vimu Vimu1g02015 Chr1 27621388 27628288 -
Vra Vra6g1137 Chr6 17947370 17982278 -
Pvu Pvu1g0769 Chr1 10271622 10274205 -
Acco Acco05g2463 Chr05 40348789 40351593 -
Accr Accr3g00540 Chr3 6197995 6200091 +
Aed Aed6g0945 Chr6 11855387 11859507 +
Alju Alju07g2431 Chr07 50014387 50016504 -
Amo Amo06g2441 Chr06 86193077 86196763 -
Apr Apr9g0025 Chr9 346585 349708 +
Bisa Bisa05g1244 Chr05 21811888 21814494 +
Car Car04g03027 Chr04 58147952 58151487 -
Dere Dere05g2207 Chr05 32197481 32200004 -
Dod Dod08g1511 Chr08 32434835 32438551 +
Enph Enph7g1104 Chr7 16662526 16666467 -
Glsi Glsi10g0902 Chr10 5842647 5845459 -
Lasa Lasa5g04341 Chr5 653238634 653239163 -
Lele Lele25g0467 Chr25 2941089 2943167 +
Lele Lele26g0479 Chr26 3064315 3066266 +
Lele Lele27g1615 Chr27 21777010 21779109 -
Lele Lele28g0473 Chr28 3032274 3034223 +
Mepo Mepo4g00863 Chr4 11310418 11313981 +
Mesa Mesa1g00902 Chr1 12113315 12115088 +
Mibi Mibi08g2140 Chr08 38887201 38891373 -
Mtr Mtr1g0030 Chr1 337498 341286 -
Phco Phco2g00841 Chr2 9827277 9829315 -
Prci Prci2g0752 Chr2 5663499 5666194 +
Sto Sto5g0657 Chr5 4432527 4435049 +
Trre Trre1g00923 Chr1 7015933 7018975 +
Tsu Tsu01g00876 Chr01 7946039 7963898 +
Vimu Vimu1g02014 Chr1 27576723 27578992 +
Vra Vra6g1136 Chr6 17925977 17928488 +
Pvu Pvu1g0770 Chr1 10280583 10298929 -
Adu Adu06g02670 Chr06 102879795 102886463 -
Car Car04g03040 Chr04 58306999 58315230 -
Gso Gso19g0607 Chr19 21417740 21452425 +
Lasa Lasa6g00772 Chr6 28074207 28081248 +
Mepo Mepo4g00847 Chr4 11155012 11163096 +
Mesa Mesa1g00887 Chr1 11956001 11963619 +
Mtr Mtr1g0048 Chr1 496958 506007 -
Phco Phco2g00843 Chr2 9844960 9866419 -
Psa Psa6g0826 Chr6 29093970 29100615 -
Pste Pste8g02090 Chr8 17606823 17616994 -
Spst Spst8g01723 Chr8 20666311 20669231 -
Trre Trre1g00909 Chr1 6904874 6911689 +
Tsu Tsu01g00863 Chr01 7831005 7838379 +
Vimu Vimu1g02012 Chr1 27504941 27527314 +
Vra Vra6g1135 Chr6 17880477 17903891 +
Pste Pste5g00994 Chr5 6521247 6529183 +
Aip Aip06g03048 Chr06 125301772 125302652 +