Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00884 ATGATAATGGAAGATGTAGCCAGCTCTGGTAACTTACCTTTTAAGGTAACCGCCGTAGCTGCCGGGGAAGCACATACTCTCCTTCTCACTGGGGATGGGCGTGTATATTCTTGGGGAAGAGGAACATTGGGAAGACTTGGTTTAGGATCAGAACAAGACCAACTTTTTCCAGCTCAAGTCAAGTTTGGATCACAAGACTCTGTTAGAATAGTAGGAATTGCTGCTGGTGCATATCATAGTCTAGCTCTTGCAGATGATGGATCTGTTTGGTGCTGGGGTTACAATTTATATGGATATTATTCAGTAGTTCCTTGTTTATTGAACAAATTTCTTGAGTTGCATCCCTCAGGTTCTTCAACCTTATTGTTAGAAGAAGCTGAAGGGCAAACACCACTAAAGATAATTTCTATCAAAGCAGGAGGAATGATGTCACTATCTATTGACAATCTTGGTGCCCTATGGATGTGGGGAAACTGTCCTAATCAAAGCAAAGAAGGTATATTCTCAATTGTAAGCCATTTCACTCCAACACCAGTATGGGATTTCCATGGTCACACAGTAGTAAAAGTTGCATGTGGAAATGAACACATTATAGCACTAGTAAGTATTGGAGAATCATACAATGGTGAAAATGATGATCTCATTTGTTACTCTTGGGGTACAAACAATCATGGTCAATTAGGTTTAGGTGATAAAGAAAATAGACCAAATCcagaaattataaaaacatttgATCAAAATTCTCATTGGTCAATTTATGAAATAGCATGTGGTGCTTTTCATACTGCTTTGTTAACTCATAGAAAAAGACCTAATGATGATACATTAGAGAGTGTATGTTGGACATTTGGTCTTGGTGAAAATGGACAACTTGGTCATGGAACAACACAAAGTTCATTAATTCCTGAACTTGTTCAAGAATTGCCAAAATTTATAAACCTTGTTTCTATTGATTGTGGTTTGTTTCATACTTGTGTTGTTTCGTCGGACGGAGATGTTTGGTCGTGGGGAATGGAGAAAGGTCTTGGTTTATATCCGGATGCGCGAGTTGTTGGTGAATATTCTAGTGACGCTCTTTCTCCGCTTGTTGTAAGTAATCCTTATGAGACTAAATTTTTGGAACCGGTTCAAGTTGCGTGTGGCGCGGCTCATACTGTCATTGTTAATCAAGAGGGATATAGAATTTGGTCTTtaggaagaggaagaagtgGTGTTCTTGGAAATGGTAAGGTAATTGATTGTTACACTCCTACTTTAGTGTTATGGCCTCCATTGATGGAAGATTTTCATTTCAAACATGAGGAACCGTCGAGTTCTCGCGAACAAGAtaagggaaaagaaaaagactGA 1350 0.3741 MIMEDVASSGNLPFKVTAVAAGEAHTLLLTGDGRVYSWGRGTLGRLGLGSEQDQLFPAQVKFGSQDSVRIVGIAAGAYHSLALADDGSVWCWGYNLYGYYSVVPCLLNKFLELHPSGSSTLLLEEAEGQTPLKIISIKAGGMMSLSIDNLGALWMWGNCPNQSKEGIFSIVSHFTPTPVWDFHGHTVVKVACGNEHIIALVSIGESYNGENDDLICYSWGTNNHGQLGLGDKENRPNPEIIKTFDQNSHWSIYEIACGAFHTALLTHRKRPNDDTLESVCWTFGLGENGQLGHGTTQSSLIPELVQELPKFINLVSIDCGLFHTCVVSSDGDVWSWGMEKGLGLYPDARVVGEYSSDALSPLVVSNPYETKFLEPVQVACGAAHTVIVNQEGYRIWSLGRGRSGVLGNGKVIDCYTPTLVLWPPLMEDFHFKHEEPSSSREQDKGKEKD 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00884 449 Gene3D - 5 213 IPR009091 -
Tsu01g00884 449 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 449 - -
Tsu01g00884 449 PRINTS Chromosome condensation regulator RCC1 signature 190 206 IPR000408 -
Tsu01g00884 449 PRINTS Chromosome condensation regulator RCC1 signature 34 50 IPR000408 -
Tsu01g00884 449 PRINTS Chromosome condensation regulator RCC1 signature 70 83 IPR000408 -
Tsu01g00884 449 PRINTS Chromosome condensation regulator RCC1 signature 388 409 IPR000408 -
Tsu01g00884 449 PRINTS Chromosome condensation regulator RCC1 signature 320 338 IPR000408 -
Tsu01g00884 449 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 151 203 IPR000408 -
Tsu01g00884 449 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 73 83 IPR000408 -
Tsu01g00884 449 Gene3D - 214 433 IPR009091 -
Tsu01g00884 449 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 33 86 IPR000408 -
Tsu01g00884 449 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 214 268 IPR000408 -
Tsu01g00884 449 SUPERFAMILY RCC1/BLIP-II 22 425 IPR009091 -
Tsu01g00884 449 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 9 449 - -
Tsu01g00884 449 Pfam Regulator of chromosome condensation (RCC1) repeat 217 265 IPR000408 -
Tsu01g00884 449 Pfam Regulator of chromosome condensation (RCC1) repeat 281 327 IPR000408 -
Tsu01g00884 449 Pfam Regulator of chromosome condensation (RCC1) repeat 32 83 IPR000408 -
Tsu01g00884 449 Pfam Regulator of chromosome condensation (RCC1) repeat 330 387 IPR000408 -
Tsu01g00884 449 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 391 IPR000408 -
Tsu01g00884 449 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 190 200 IPR000408 -
Tsu01g00884 449 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 255 265 IPR000408 -
Tsu01g00884 449 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 278 330 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00884 Tsu-Chr1 8083969 8086816 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00884 - - gmx:100801214 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00444 07 3403859 3406716 Tsu01g00884 01 8083969 8086816 PCT