Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00834 ATGAGAGTTTCGGCTCAGACTAATAATTCTGGGAAGGAGAGCAGCTCGACCTCGCCGTCGGAGGCGGCGGCGCCGTTAGAGTCGAAAACGGAGAAGCGAAACCGGGAGTCGAACAAGCATCCGGTGTACCGAGGGGTGCGCATGCGGAACTGGGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAATCGAGAATATGGCTGGGGACATTCCCCACGCCGGAAATGGCGGCTAGGGCGCATGACGTGGCAGCGCTGAGCATAAAGGGGAACAGCGCCATCCTCAACTTCCCCGAACTCGCCGCCTCGCTTCCTCGTCCCGTGTCATTGGCCCCTCGCGACGTGCAAGCCGCAGCGGCAAAAGCGGCTCACATGGACTTCCCTCCTTCGTCCACGTCATTATCATCATCATCGTCATCGTTGGTCTCAACAACTTCCTCCTCCTCGTCTTTATCCTCGTTGGTTTCAGCCGCGGACTTGTCCACTGAGTCGGAGGAACTGAGCCAGATCATCGAGTTGCCGAGGTTGGAAACGAGTTACGAGTTGGGAAACGAGTTTGTGTTCGCGGACTCGCAGGACACGTGGATGTATCAGCCACCGATACCTTGGTCGCAAACCACGTACGATGGTTCTCATGCCGATGATGATATTGTGGCAGAGACTGGGCTTGTCACTACTTTTAAGAGTTTTCTGTGGGATTACTGA 708 0.5607 MRVSAQTNNSGKESSSTSPSEAAAPLESKTEKRNRESNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAASLPRPVSLAPRDVQAAAAKAAHMDFPPSSTSLSSSSSSLVSTTSSSSSLSSLVSAADLSTESEELSQIIELPRLETSYELGNEFVFADSQDTWMYQPPIPWSQTTYDGSHADDDIVAETGLVTTFKSFLWDY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00834 235 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Phco2g00834 235 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Phco2g00834 235 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Phco2g00834 235 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Phco2g00834 235 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Phco2g00834 235 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Phco2g00834 235 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Phco2g00834 235 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Phco2g00834 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 184 - -
Phco2g00834 235 MobiDBLite consensus disorder prediction 26 41 - -
Phco2g00834 235 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Phco2g00834 235 MobiDBLite consensus disorder prediction 1 41 - -
Phco2g00834 235 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00834 Phco-Chr2 9680320 9681027 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g00834 AP2 2.5e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00834 2 9680320 9681027 Phco2g00834 2 9680320 9681027 ECH
Phco7g00934 7 7501760 7502344 Phco2g00834 2 9680320 9681027 PCT