Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3544 ATGGACTCCCAAATCCAGAAGCCTTTCAAAGTATACCTAGTTTCCTCCCCCGACTCGCCCGAGTTCACCCTCCTCACTCGGTCCCTGACTCAGTCCTCGCTCGTCGGGCTCGACGCCGAGTGGAAGCCTGTCCGAACACACCAGTCTTCGTTCCCCGACGTGTCGCTGCTCCAAATCGCCTGCCAACTCGGCGGCGACTCGGAACCTGACTCGGCCGTGTTCCTCCTCGACCTTCTTTCCATCCCTCTCTCCTCGCTATGGAAGCCACTCCGAGAAATGCTGGAATCCCCCGAGACCTTGAAACTTGGTTTCAGATTCAAGCAAGATTTGATATATCTGTCTTCTACTTTCTGTTCCCATGGCTGCGACCCTGGTTTCGATAAGGTGGAGCCGTATTTGGATATCACGAGTCTGTATAATCTTCTGTATCATAAGAAGCATGGACAGAATGCACCCAAGCAGACTAAAAGTTTGTCGAATATATGCATGGAAGTCCTGGGTTTTCCTCTCTCAAAGGAACTCCAATGTAGTGATTGGTCATGTCGTCCTCTTACAGAAGAGCAGATAACATATGCAGCTATGGATGCTCATTGCTTGGTTGAAATATTTAACGTCTTCAATTCAAAAGTTGCCAATACAGGAGATTTTCTTCTCAAGACAACCACATTGTCTAATTCAAAGGAAAATGTTGGGCTGAAAGAGCTTTTTGCAAAGCATGATTCGAATGATAATGTCCTGGGAATGCAATTTTGTGAAGCCTTATCAATTGTTCGAGAGACTATTGGTTCTGATGCTGGTCAGGTGATACCTTCAGCTGAAAGAACAATTCAAAGGTTATCATGTTCGGTTAATGTACCTTCAGATGAATTTTCGAAGATTGTGAAAAAATATGGTGACAGAATTTTGTTAAAGGAGTCTGACAGAAGACCCAAAACCTCAAAAAAGAAAGCAAAAAAGTGGTCATCAACTAATGGCATTAGCAATGTAAAGCATTTGGAAAAATTTGATGACTGGCAAGGTATCCCACCTTGGGATCCATCAGTAGGAGGGGATGGATATCCAAAGTTCCTTTGTGATGTTATGGTTGAAGGCTTGGCTAAACATTTACGATGTGTTGGGATGGATGCTGCAATTCCTTATTCAAAGAAGCCTGAACAAAGGGAGTTGATAGAGCAAGCCCAGAGAGAGAAGAGAGTACTTTTGACACGAGATGCGAAGTTGCTAAGATATGAATATCTAATAAATAACCAAATATATAAAGTGAAGAGTCTTCTGAAAAATGACCAGCTACTTGAGGTCATTGAAGCCTTTCAGCTAAAAATTAGTGAGGATCAGCTGATGTCAAGATGTACAAAATGCAATGGGAGATTTATACAAAAGCCACTGTCTACTGAAGAGGCTATTGAAGCTGCAAAGGGTTTTCAAAAAATTCCAAATTGCTTATTTAACAAGAATATAGAGTTCTGGCAGTGCATGGACTGTCACCAACTTTATTGGGAGGGAACCCAATACCACAATGCAATACAGAAGTTCATTGATGTCTGCAAGCTGAGTGATTAA 1560 0.4269 MDSQIQKPFKVYLVSSPDSPEFTLLTRSLTQSSLVGLDAEWKPVRTHQSSFPDVSLLQIACQLGGDSEPDSAVFLLDLLSIPLSSLWKPLREMLESPETLKLGFRFKQDLIYLSSTFCSHGCDPGFDKVEPYLDITSLYNLLYHKKHGQNAPKQTKSLSNICMEVLGFPLSKELQCSDWSCRPLTEEQITYAAMDAHCLVEIFNVFNSKVANTGDFLLKTTTLSNSKENVGLKELFAKHDSNDNVLGMQFCEALSIVRETIGSDAGQVIPSAERTIQRLSCSVNVPSDEFSKIVKKYGDRILLKESDRRPKTSKKKAKKWSSTNGISNVKHLEKFDDWQGIPPWDPSVGGDGYPKFLCDVMVEGLAKHLRCVGMDAAIPYSKKPEQRELIEQAQREKRVLLTRDAKLLRYEYLINNQIYKVKSLLKNDQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAIEAAKGFQKIPNCLFNKNIEFWQCMDCHQLYWEGTQYHNAIQKFIDVCKLSD* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3544 519 SUPERFAMILY Ribonuclease H-like 10 214 IPR012337 -
Amo16g3544 519 CDD mut-7_like_exo 11 206 IPR037432 GO:0008408
Amo16g3544 519 Gene3D - 4 214 IPR036397 GO:0003676
Amo16g3544 519 Pfam 3'-5' exonuclease 21 210 IPR002562 GO:0003676|GO:0006139|GO:0008408
Amo16g3544 519 Pfam Mut7-C RNAse domain 354 510 IPR002782 -
Amo16g3544 519 SMART 35exoneu6 11 211 IPR002562 GO:0003676|GO:0006139|GO:0008408
Amo16g3544 519 PANTHER 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN 5 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3544 Amo-Chr16 145438659 145444797 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3544 K09122 - gmx:100781231 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3544 16 145438659 145444797 Amo16g3544 16 145438659 145444797 ECH