Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03013 ATGGAAGATGTTGTTGGCTCCGGCGCCTTACCGATTAAAGTAACCGCCGTCGCTGCAGGGGAAGCACATACTCTTCTTCTCACCGGGGATGGTAGTGTATATTCTTGGGGAAGAGGAACATTGGGAAGGCTTGGTTTGGGTTCAGAAGAAGACCAACTTTTTCCAGCTCAAGTCAAGTTTGGATCAGAGGACTCTGTTAGAATAGTGGGAATTGCTGCTGGTGCATATCATAGTCTAGCTCTTTCAGATGATGGATGTGTTTGGTGCTGGGGTTACAATTTATATGGATATTACTCTGTAGTTCCTTGCTTATTGAACAAGTTTCTTGAGCTGCACCCCTCAGATTCTTCAACTTTCATGTCATCACAAGAAGAAGGGAAAACATCACTTAAGATATTTTCTATCAAAGCAGGAGGAATGATGTCACTATCTATTGACAATCTTGGAGCCCTATGGATATGGGGAAATTGTCCTCACCAAAGCAAAGAAGGTACATTCTCAATAGTAACCAATTTCACTCCAACACCAATATGGGATTTCCATGGTCACATTGTAGTAAAAGTTGCATGTGGAAATGAACACATTATAGCACTAGTTAGTATTGGAGAATCATACAAAGGTGAAGAAGATGAACTCATGTGTTACTCTTGGGGTAACAACAATCATGGTCAATTAGGTTTAGGTGATGAAGAGAATAGGCCACATCCACAATTGGTTAAAACATTTGATCAAAAGTCTCCTTGGAAAATTTATGAGGTGGCATGTGGTGCATTTCACACTGCTTTGTTAACTCATAGGAAAAAGACTAATGACAAATTAGAAAGTGTGTGTTGGACATTTGGACTTGGTGATAATGGACAACTTGGTCATGGAACAACACAAAGCACGTCAATTCCTGAACTTGTTCAGGAATTGCCACAATTTGTGAATCTTGTTTCTATTGATTGTGGTTTGTTTCATACTTGTGTTGTTTCGTCGGTTGGAGATGTTTGGTCTTGGGGAATGGAGAAGGGTCTTGGTTTATATCCCAATGCGCGAGTTGTTGGCGAGTATTCTAGTGATGCTCTTTTTCCTCTACGTGTTTTATGTAGTACTTGTGAGGGTAAATTTTTGGGACCAGTTGGTGTCGTGTGTGGTGCGGCTCACACGGTTATTGTTGCACAAGAGGGATACAAAGTTTGGTCTATGGGAAGAGGAAGAAGTGGTGTTCTTGGAAATGGTAAGTTAATGGATTGTTACACTCCAACATTAGTGTTGTGGCCTCCATTAGTGGAAGATTTCAATTTTAAACAAGTAGGATCACCGAGTTCTCGCAACCAGGATAAAGGACAAAGAGATTGA 1341 0.4087 MEDVVGSGALPIKVTAVAAGEAHTLLLTGDGSVYSWGRGTLGRLGLGSEEDQLFPAQVKFGSEDSVRIVGIAAGAYHSLALSDDGCVWCWGYNLYGYYSVVPCLLNKFLELHPSDSSTFMSSQEEGKTSLKIFSIKAGGMMSLSIDNLGALWIWGNCPHQSKEGTFSIVTNFTPTPIWDFHGHIVVKVACGNEHIIALVSIGESYKGEEDELMCYSWGNNNHGQLGLGDEENRPHPQLVKTFDQKSPWKIYEVACGAFHTALLTHRKKTNDKLESVCWTFGLGDNGQLGHGTTQSTSIPELVQELPQFVNLVSIDCGLFHTCVVSSVGDVWSWGMEKGLGLYPNARVVGEYSSDALFPLRVLCSTCEGKFLGPVGVVCGAAHTVIVAQEGYKVWSMGRGRSGVLGNGKLMDCYTPTLVLWPPLVEDFNFKQVGSPSSRNQDKGQRD 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03013 446 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 188 198 IPR000408 -
Car04g03013 446 Pfam Regulator of chromosome condensation (RCC1) repeat 278 324 IPR000408 -
Car04g03013 446 Pfam Regulator of chromosome condensation (RCC1) repeat 215 263 IPR000408 -
Car04g03013 446 Pfam Regulator of chromosome condensation (RCC1) repeat 30 81 IPR000408 -
Car04g03013 446 Gene3D - 4 210 IPR009091 -
Car04g03013 446 Gene3D - 211 439 IPR009091 -
Car04g03013 446 PRINTS Chromosome condensation regulator RCC1 signature 317 335 IPR000408 -
Car04g03013 446 PRINTS Chromosome condensation regulator RCC1 signature 32 48 IPR000408 -
Car04g03013 446 PRINTS Chromosome condensation regulator RCC1 signature 188 204 IPR000408 -
Car04g03013 446 PRINTS Chromosome condensation regulator RCC1 signature 68 81 IPR000408 -
Car04g03013 446 PRINTS Chromosome condensation regulator RCC1 signature 386 407 IPR000408 -
Car04g03013 446 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 12 443 - -
Car04g03013 446 SUPERFAMILY RCC1/BLIP-II 247 418 IPR009091 -
Car04g03013 446 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 71 81 IPR000408 -
Car04g03013 446 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 149 201 IPR000408 -
Car04g03013 446 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 212 266 IPR000408 -
Car04g03013 446 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 275 327 IPR000408 -
Car04g03013 446 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 253 263 IPR000408 -
Car04g03013 446 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 31 84 IPR000408 -
Car04g03013 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 12 443 - -
Car04g03013 446 SUPERFAMILY RCC1/BLIP-II 10 303 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03013 Car-Chr4 57999790 58002759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g03013 - - gmx:100801214 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03013 04 57999790 58002759 Car04g03013 04 57999790 58002759 ECH
Car05g03110 05 75896039 75898856 Car04g03013 04 57999790 58002759 PCT