Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0608 ATGTCAAAGGCGGTGGTTTATATCCTAATAGCCACCGCCGTGTTGTTCTTCATATTCATGTCCCCATTGAATCTACAGAAGCCAAAGGGTCGTCCTAATCGCAGGTTTGGGTACAAACTACTTGAGCGAGCACCGAATTTGGACCCTCTTGTGACAAATATCGAGAAAGAGATTGAAAAGAAAATGTATCATGAACCTGCTCCTCGTATGTTGTCCAATTTGGATAGCACCACATCGGTTAGTGATGTTATAGAGACATACCAATATCTTACCTCGGGTGGTAAATTGAACACGACGTTACGTTTGATCATTTTGTTCCCTTTGTTAGATAGAGAACCGAAAGATGGGGTGATTGGTTTCAATGAGTTAGAGGCGTGGATTACTCAACGAGCAATAGAGAGATTAGATTATCTCACGCAAGTTGAGTTGGATTCCAAAGACAAGAACGGGGATTTGGCCATCTCGTTTAAGGAGTATTTACCTCAGTTTTCTGAAAAGGATATGGAGAAAAAAGAAATGGGGTATGGCGAAGCAGGATGGTGGATGGAAAGATTTGAAGTTGCAGACATTGATCACAATAGGCTTCTGAACTTCACCGAACTTAAAGATTTTTTACACCCCGAAGATAGCAAAAATCAAGAAATGTTGAAATGGATGTTGAAAGATAGACTAATGCGCATGGACAATGGAAATGATGGGAAACTAAACTTCAATGAATTTGAAGGCCGTCTATATAGTACATATGAAAGTTATATGAACTTTGAAATTAATGGAGGACATGTACCTTCTCCAAAAGATAAATTTGTTAAGCTTGATGTGAACAAAGACAAATTTTTGTCACCAGAAGAATTGATACCGATACTTTCTTATCTGTATCCGGGAGAGGAAGCTTATGCTAAATATTTCACATGTTACTTAATGAATGAGGCTGATGATAATGGAGATGGAAAGTTGACACTCCAAGAGATGCTTGATCATGAGTTTACTTTCTACAACACAGTTCATGCAGATGGTCACCAAGAAAGTGATGATGATCATGATGAGCTTTGA 1050 0.3876 MSKAVVYILIATAVLFFIFMSPLNLQKPKGRPNRRFGYKLLERAPNLDPLVTNIEKEIEKKMYHEPAPRMLSNLDSTTSVSDVIETYQYLTSGGKLNTTLRLIILFPLLDREPKDGVIGFNELEAWITQRAIERLDYLTQVELDSKDKNGDLAISFKEYLPQFSEKDMEKKEMGYGEAGWWMERFEVADIDHNRLLNFTELKDFLHPEDSKNQEMLKWMLKDRLMRMDNGNDGKLNFNEFEGRLYSTYESYMNFEINGGHVPSPKDKFVKLDVNKDKFLSPEELIPILSYLYPGEEAYAKYFTCYLMNEADDNGDGKLTLQEMLDHEFTFYNTVHADGHQESDDDHDEL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0608 349 Pfam Secreted protein acidic and rich in cysteine Ca binding region 267 323 IPR019577 GO:0005509
Gso19g0608 349 PANTHER RETICULOCALBIN 1 349 - -
Gso19g0608 349 Gene3D - 69 244 - -
Gso19g0608 349 SMART efh_1 219 247 IPR002048 GO:0005509
Gso19g0608 349 SMART efh_1 306 330 IPR002048 GO:0005509
Gso19g0608 349 SMART efh_1 263 291 IPR002048 GO:0005509
Gso19g0608 349 SMART efh_1 180 208 IPR002048 GO:0005509
Gso19g0608 349 SUPERFAMILY EF-hand 179 326 IPR011992 -
Gso19g0608 349 SUPERFAMILY EF-hand 101 161 IPR011992 -
Gso19g0608 349 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 349 - -
Gso19g0608 349 ProSitePatterns EF-hand calcium-binding domain. 272 284 IPR018247 -
Gso19g0608 349 ProSitePatterns EF-hand calcium-binding domain. 311 323 IPR018247 -
Gso19g0608 349 ProSitePatterns EF-hand calcium-binding domain. 189 201 IPR018247 -
Gso19g0608 349 ProSiteProfiles EF-hand calcium-binding domain profile. 176 211 IPR002048 GO:0005509
Gso19g0608 349 Gene3D - 260 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0608 Gso-Chr19 21541549 21545702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0608 1 310 EF-hand Containing Proteins AT4G27790 40.764 1.16e-80 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0608 K23901 - gmx:100801332 716.842