Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0771 . . . . . . . . . . . . . . . . Car04g03041 . . . . . . . Gso14g1145 . . . . . . . . Lasa6g00774 . . . . . . Mepo4g00846 Mesa1g00885 . Mtr1g0049 . Phco2g00844 . . Pste8g02091 . . . Spst8g01725 . . . Trre1g00907 Tsu01g00862 . . . . . .
Pvu1g0772 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g5325 . . . . . . Phco2g00846 . . Pste8g02092 . . . Spst8g01726 . . . . . . . Vimu1g02007 . . .
Pvu1g0773 . . Adu06g02654 . . Ahy16g2797 . Aip06g03146 . Amo16g3563 . . Arst6g03418 . . . Car04g03049 . . . . . . . Gso19g0598 . . . . . . . . Lasa6g00761 . . . . Lja1g5711 . Mepo4g00837 Mesa1g00872 . Mtr1g0061 . Phco2g00847 . Psa6g0804 . . . . Spst8g01729 . . . Trre1g00896 Tsu01g00851 . . Vimu1g02005 . . .
Pvu1g0774 . . Adu06g02656 . . Ahy16g2800 . Aip06g03149 . Amo16g3567 . . Arst6g03420 . . . Car04g03051 . . . . . . . . . . . . . . . . Lasa6g00760 . . . . . . Mepo4g00834 Mesa1g00869 . Mtr1g0064 . Phco2g00848 . Psa6g0801 . . . . Spst8g01730 . . . Trre1g00893 . . . Vimu1g02003 . . .
Pvu1g0775 . . . . . . . . . . . . . . . . . Cca05g00720 . Dod01g1887 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0776 . . Adu06g02657 . . Ahy16g2803 . Aip06g03150 . Amo16g3568 . . Arst6g03423 . . . Car04g03052 Cca05g00729 . . . . Gma17g01754 . . Gso17g1571 . . . . . . . Lasa6g00759 . . . . . Mal3g3099 Mepo4g00833 Mesa1g00868 . Mtr1g0065 . Phco2g00850 . Psa6g0800 . Pumo9g00936 . Seca8g02705 Spst8g01731 . . Tpr6g1084 Trre1g00892 Tsu01g00847 . Vifa3g04358 . . . .
Pvu1g0777 . . Adu06g02611 . . . Ahy6g2364 . . . . . . . . . . . . . . . . . . . Lal8g1114 . . . . . . . . . . . . . Mepo4g00967 . . Mtr1g0843 . Phco2g00851 . . Pste8g00294 . . . Spst8g01733 . . . . . . . . . . Vra6g1621
Pvu1g0778 . . . . Aev07g1690 . . . . . . . . . . . . Cca05g00736 . . . . . . . . . . . . . . . . . . . . . . . . . Mtr1g0836 . . . Psa6g1012 . Pumo9g01021 . . . . . . . . . Vifa3g04127 . . . .
Pvu1g0779 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g1013 . . . . . . . . . . . . . . . Vra6g1645
Pvu1g0780 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pste Pste8g00294 Chr8 1609277 1614387 -
Aev Aev07g1690 Chr07 17737277 17741000 -
Pvu Pvu1g0771 Chr1 10311205 10316991 +
Car Car04g03041 Chr04 58316976 58320149 +
Gso Gso14g1145 Chr14 25300386 25316307 +
Lasa Lasa6g00774 Chr6 28107751 28108240 -
Mepo Mepo4g00846 Chr4 11150400 11154823 -
Mesa Mesa1g00885 Chr1 11934583 11941751 -
Mtr Mtr1g0049 Chr1 508279 512531 +
Phco Phco2g00844 Chr2 9869688 9877257 +
Pste Pste8g02091 Chr8 17624560 17627553 +
Spst Spst8g01725 Chr8 20696474 20700490 +
Trre Trre1g00907 Chr1 6901557 6904649 -
Tsu Tsu01g00862 Chr01 7825715 7830023 -
Pvu Pvu1g0772 Chr1 10398673 10402411 +
Lja Lja1g5325 Chr1 84427212 84429205 -
Phco Phco2g00846 Chr2 9960156 9963672 +
Pste Pste8g02092 Chr8 17677752 17682424 +
Spst Spst8g01726 Chr8 20741479 20744742 +
Vimu Vimu1g02007 Chr1 27350252 27353542 -
Pvu Pvu1g0773 Chr1 10420297 10432609 +
Adu Adu06g02654 Chr06 102599051 102604056 +
Ahy Ahy16g2797 Chr16 141219878 141225516 +
Aip Aip06g03146 Chr06 127064821 127070480 +
Amo Amo16g3563 Chr16 145731092 145737306 +
Arst Arst6g03418 Chr6 101793777 101800023 +
Car Car04g03049 Chr04 58406467 58414968 +
Gso Gso19g0598 Chr19 20311029 20318192 +
Lasa Lasa6g00761 Chr6 27759418 27760156 -
Lja Lja1g5711 Chr1 101032524 101041270 +
Mepo Mepo4g00837 Chr4 11024565 11031333 -
Mesa Mesa1g00872 Chr1 11687293 11695946 -
Mtr Mtr1g0061 Chr1 631221 636545 +
Phco Phco2g00847 Chr2 9968947 9986075 +
Psa Psa6g0804 Chr6 28087313 28093431 -
Spst Spst8g01729 Chr8 20754647 20764248 +
Trre Trre1g00896 Chr1 6834500 6840102 -
Tsu Tsu01g00851 Chr01 7716286 7722196 -
Vimu Vimu1g02005 Chr1 27227852 27229860 -
Pvu Pvu1g0774 Chr1 10442163 10444246 -
Adu Adu06g02656 Chr06 102650637 102652111 -
Ahy Ahy16g2800 Chr16 141303148 141305171 -
Aip Aip06g03149 Chr06 127135886 127137997 -
Amo Amo16g3567 Chr16 145814630 145816834 -
Arst Arst6g03420 Chr6 101845519 101847036 -
Car Car04g03051 Chr04 58427485 58430613 -
Lasa Lasa6g00760 Chr6 27702998 27703900 +
Mepo Mepo4g00834 Chr4 11003153 11005677 +
Mesa Mesa1g00869 Chr1 11666693 11667347 +
Mtr Mtr1g0064 Chr1 652553 654718 -
Phco Phco2g00848 Chr2 9995129 9996936 -
Psa Psa6g0801 Chr6 28059658 28062040 +
Spst Spst8g01730 Chr8 20778097 20779030 -
Trre Trre1g00893 Chr1 6816766 6819750 +
Vimu Vimu1g02003 Chr1 27162037 27163400 -
Pvu Pvu1g0775 Chr1 10455247 10463755 -
Cca Cca05g00720 Chr05 19295569 19314200 +
Dod Dod01g1887 Chr01 53740905 53744163 +
Pvu Pvu1g0776 Chr1 10495702 10501018 +
Adu Adu06g02657 Chr06 102668106 102673060 -
Ahy Ahy16g2803 Chr16 141349246 141354509 -
Aip Aip06g03150 Chr06 127178518 127183586 -
Amo Amo16g3568 Chr16 145860878 145866231 -
Arst Arst6g03423 Chr6 101862917 101867994 -
Car Car04g03052 Chr04 58439805 58445372 -
Cca Cca05g00729 Chr05 19695924 19702301 +
Gma Gma17g01754 Chr17 24332940 24337996 -
Gso Gso17g1571 Chr17 24012300 24017928 -
Lasa Lasa6g00759 Chr6 27637583 27640403 +
Mal Mal3g3099 Chr3 106140496 106146417 -
Mepo Mepo4g00833 Chr4 10993375 10998003 +
Mesa Mesa1g00868 Chr1 11647959 11651961 +
Mtr Mtr1g0065 Chr1 659207 663652 -
Phco Phco2g00850 Chr2 10047060 10054144 +
Psa Psa6g0800 Chr6 27967779 27971661 +
Pumo Pumo9g00936 Chr9 21324564 21331133 +
Seca Seca8g02705 Chr8 66315305 66323504 -
Spst Spst8g01731 Chr8 20781027 20784843 -
Tpr Tpr6g1084 Chr6 10331162 10334498 -
Trre Trre1g00892 Chr1 6800968 6805671 +
Tsu Tsu01g00847 Chr01 7691284 7696700 +
Vifa Vifa3g04358 Chr3 1246766367 1246769248 -
Pvu Pvu1g0777 Chr1 10506529 10509049 -
Adu Adu06g02611 Chr06 101908199 101911955 +
Ahy Ahy6g2364 Chr6 107559856 107563970 +
Lal Lal8g1114 Chr8 9325050 9329406 -
Mepo Mepo4g00967 Chr4 12855609 12859144 +
Mtr Mtr1g0843 Chr1 9566771 9569830 +
Phco Phco2g00851 Chr2 10068576 10071430 -
Pste Pste8g00294 Chr8 1609277 1614387 -
Spst Spst8g01733 Chr8 20807724 20810482 -
Vra Vra6g1621 Chr6 31870470 31875453 +
Pvu Pvu1g0778 Chr1 10559551 10561781 -
Aev Aev07g1690 Chr07 17737277 17741000 -
Cca Cca05g00736 Chr05 19890609 19892522 +
Mtr Mtr1g0836 Chr1 9505686 9509472 -
Psa Psa6g1012 Chr6 39232169 39234751 -
Pumo Pumo9g01021 Chr9 25951587 25952369 +
Vifa Vifa3g04127 Chr3 1218413934 1218416401 -
Pvu Pvu1g0779 Chr1 10561957 10565192 +
Psa Psa6g1013 Chr6 39287995 39299754 +
Vra Vra6g1645 Chr6 32273759 32276617 -
Pvu Pvu1g0780 Chr1 10575384 10576681 -