Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01721 ATGTCAAAGGCGGTGGTTTATATTCTAATAGCCACCGCCATGTTGTCCTACGAGTTATTGTTCTCGTTGAACCTGGAGGAACCAAAGGGTCGCCTTAACCGTAGGTTTGGGTACAAACTGCTTGAACAAGCACCGAATTTTGACCCTCTTGTCACAAATTTTGAGAGAGGGGTTGAAAACAAAATCATGCACCAGGACGAGGAAACCGCTTCTCGTACGTCGTCCAATTTGGACAGTACCACGTCGCTTGGTGATGTTGCAGGGACATACCATTATCTTACCTCTGGTGGTAAATTGAACACCACGTTAAGATTGATCATTTTGTTCCCTTTGTTAGATAGAGAACCCAAAGATGGGGTTGTTGGTTTCAATGAGCTAGAGTCTTGGATCATTCAACGAGCAACAGAGAGATTAGATTATCTCACACAAGCTGAGTTGGAGTCCAAAGACAAGAATGGGGATTCGTCCATCTCTTTTTCGGAGTACTTACCTAAGTTTTCTGACGATGATATAGAGAAAAACGAAATGGGGCACGGCGAATCAGGATGGTGGAAGGAAAAATTTGAAATTGCAGACATTGATCACAATGGGCTTCTGAATTTCACCGAACTTAGAGATTTTTTGCATCCAGAAGATAGCAGAAATCAAGAAATGCTAAAATGGATGTTGAAAGATAAACTAAAGCGCATGGACATTGAAAATGATGGGAAGATGAACTTCAATGAATTTGAAGACCATGTATATAACACATACGAAAGTTATATGGACTTCGAAAGTAATGGAGTTGTACCTTCTTCAAAAGATAAATTTGCTGAGCTTGATGTTAACAAAGACCAATTTTTATCAACAGAAGAATTGGTTCCAATTCTTTCTTATCTCTACCCTGGCGAGCTAGCTAATGCTAAATATATCACATGCTTTTTGATGAATGAGGCTGATGAAAATGGAGATGGAAAGTTGACACTCCAAGAGATGCTTGATCATGAATTTACTTTCTACACTACAGTTCATGCTGATGGCCACCAAGAGAGCGATGATGATCATGATGAGCTTTGA 1056 0.4006 MSKAVVYILIATAMLSYELLFSLNLEEPKGRLNRRFGYKLLEQAPNFDPLVTNFERGVENKIMHQDEETASRTSSNLDSTTSLGDVAGTYHYLTSGGKLNTTLRLIILFPLLDREPKDGVVGFNELESWIIQRATERLDYLTQAELESKDKNGDSSISFSEYLPKFSDDDIEKNEMGHGESGWWKEKFEIADIDHNGLLNFTELRDFLHPEDSRNQEMLKWMLKDKLKRMDIENDGKMNFNEFEDHVYNTYESYMDFESNGVVPSSKDKFAELDVNKDQFLSTEELVPILSYLYPGELANAKYITCFLMNEADENGDGKLTLQEMLDHEFTFYTTVHADGHQESDDDHDEL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01721 351 ProSiteProfiles EF-hand calcium-binding domain profile. 267 296 IPR002048 GO:0005509
Spst8g01721 351 PANTHER RETICULOCALBIN 28 339 - -
Spst8g01721 351 Pfam Secreted protein acidic and rich in cysteine Ca binding region 245 325 IPR019577 GO:0005509
Spst8g01721 351 SUPERFAMILY EF-hand 103 166 IPR011992 -
Spst8g01721 351 ProSitePatterns EF-hand calcium-binding domain. 274 286 IPR018247 -
Spst8g01721 351 SUPERFAMILY EF-hand 182 330 IPR011992 -
Spst8g01721 351 FunFam Calcium-binding EF hand family protein 184 247 - -
Spst8g01721 351 Gene3D - 247 330 - -
Spst8g01721 351 ProSiteProfiles EF-hand calcium-binding domain profile. 179 214 IPR002048 GO:0005509
Spst8g01721 351 ProSitePatterns EF-hand calcium-binding domain. 192 204 IPR018247 -
Spst8g01721 351 Gene3D - 98 246 - -
Spst8g01721 351 ProSitePatterns EF-hand calcium-binding domain. 313 325 IPR018247 -
Spst8g01721 351 SMART efh_1 265 293 IPR002048 GO:0005509
Spst8g01721 351 SMART efh_1 183 211 IPR002048 GO:0005509
Spst8g01721 351 SMART efh_1 222 250 IPR002048 GO:0005509
Spst8g01721 351 SMART efh_1 304 332 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01721 Spst-Chr8 20631276 20633451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01721 1 312 EF-hand Containing Proteins AT4G27790 40.694 1.00e-80 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01721 K23901 - gmx:100806007 567