Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02033 TTCTTTCCCCTATCTAATTGTTCATACTACTTTGATTTGACAGATAATGGATCTGTTTGGTGTTGGGGCTACAATATATGTATCCTTAATATTCTTAGGCTATTGTTTATGAAGATCCTTGACTATTATATGGATGGTCAACTTGGTATCAATGGAGAGGACTTCCATGGTGAAAAACATAGCGATGGTGATTATTCTATAGTGCCATGCTTATTAAATAAGTTTCTCGACTTGCACCCTCCTGTTTCTTCATCAACATCAACTATTCCAGAAGCAGAAAACGAATCATCATTAAAGATAACTGTTGTGAAAGCAGGAGGAATGATGTCTCTGTGTATTGATAATCTTGGTGCCCTCTGGGTGTGGGGACATTGTCCTGTAGAAAACAAAGAAGGTGGCGTCTCTCTTATAAGCAACTTCACTCCAACACCAGTATGGGATTTTCATGGTCACATTGTGGTTCAAGTAGCATGTGGAAAGGAACATGTTGTGGCACTTGTTACTGCTGGAGAATCATACAAGGGTGTGGATGATCTAGTGTGCTATACTTGGGGTAACAACAGTCATGGTCAATTAGGGTTGGGGGATAAGGAGAATAGATCAAGACCTGAAGTGGTAAAAACATTTGACCTGGAGTCCCCTTGGGTAATTTATGAGGTAACATGTGGTGCTTTTCACACTGCTTTGCTCACTCACAGAAAGAGGTCTAGTGACACATTAGAAAGCACATGTTGGACATTTGGCCTTGGGGATAATGGACAACTTGGACATGGTACAACACAAAGCAAATTTCTTCCTGAACCTGTTAAGGAATTGCCACAAAATGTGCATCTGGTTTCTGTTGACTGTGGCTTGTTTCATACTTGTGTTGTTTCAATTGACGGGTATGTATGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGATAATAATGGTGGAACACATTCTGGTGATGCTCTTTCTCCCCTTCTTATCTCATGCAATCCATATCAGACTAAATTTCCAAAACCTATTCAAGTTGCATGCGGAGCTGCACACACTGTTCTTGTTGCGCAAGAGGGATATAAACTTTGGTCTTGGGGTAGAGGAAGGAGTGGGGTTCTTGGAAATGGTAAAACTACGGATAGTTACACTCCCACCATTGTGTTATGGCCTCCACTGATTCAAGATTTCGAACAAGAGAAATCACATAGCTCCGGAGAGCATGATAAAAAGGAGAGTGAAAGAGTCACTGAGACAAATGACAAATTATCTTCAGCACTGAACAAAGTGAAGCTACTTCAAACAAAGTTATCCGTAATGGAAAGATATGCGAATGTGCTTCATGGTTTTATCTTTGGAGAACCTTTTGATGAACAAGTTATACCTTCTTCATTGCAAAATTCTGGTGAATTTGATATTTCATGGGAATGGGAGAACATTTTAGAGGCTGCAGATAATACAAAGCTAAGTAAGTTGGAAATGGTCTACCAAAATATGCTTGCTGCTGTGAAAGATAAGCTAATGAAAAGAAAGATTAAGGAGATTGTAAATGAATGCCTATCCTCCTCACATGCCGAAAATGAGCATATATAA 1584 0.399 FFPLSNCSYYFDLTDNGSVWCWGYNICILNILRLLFMKILDYYMDGQLGINGEDFHGEKHSDGDYSIVPCLLNKFLDLHPPVSSSTSTIPEAENESSLKITVVKAGGMMSLCIDNLGALWVWGHCPVENKEGGVSLISNFTPTPVWDFHGHIVVQVACGKEHVVALVTAGESYKGVDDLVCYTWGNNSHGQLGLGDKENRSRPEVVKTFDLESPWVIYEVTCGAFHTALLTHRKRSSDTLESTCWTFGLGDNGQLGHGTTQSKFLPEPVKELPQNVHLVSVDCGLFHTCVVSIDGYVWSWGMEKGLGLCPDDNNGGTHSGDALSPLLISCNPYQTKFPKPIQVACGAAHTVLVAQEGYKLWSWGRGRSGVLGNGKTTDSYTPTIVLWPPLIQDFEQEKSHSSGEHDKKESERVTETNDKLSSALNKVKLLQTKLSVMERYANVLHGFIFGEPFDEQVIPSSLQNSGEFDISWEWENILEAADNTKLSKLEMVYQNMLAAVKDKLMKRKIKEIVNECLSSSHAENEHI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02033 527 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 410 - -
Vimu1g02033 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 179 233 IPR000408 -
Vimu1g02033 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 242 294 IPR000408 -
Vimu1g02033 527 MobiDBLite consensus disorder prediction 397 416 - -
Vimu1g02033 527 Pfam Regulator of chromosome condensation (RCC1) repeat 182 230 IPR000408 -
Vimu1g02033 527 Pfam Regulator of chromosome condensation (RCC1) repeat 244 291 IPR000408 -
Vimu1g02033 527 Pfam Regulator of chromosome condensation (RCC1) repeat 294 353 IPR000408 -
Vimu1g02033 527 PRINTS Chromosome condensation regulator RCC1 signature 360 374 IPR000408 -
Vimu1g02033 527 PRINTS Chromosome condensation regulator RCC1 signature 217 230 IPR000408 -
Vimu1g02033 527 PRINTS Chromosome condensation regulator RCC1 signature 180 196 IPR000408 -
Vimu1g02033 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 356 IPR000408 -
Vimu1g02033 527 MobiDBLite consensus disorder prediction 396 417 - -
Vimu1g02033 527 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 117 169 IPR000408 -
Vimu1g02033 527 Gene3D - 176 436 IPR009091 -
Vimu1g02033 527 Gene3D - 6 175 IPR009091 -
Vimu1g02033 527 SUPERFAMILY RCC1/BLIP-II 14 388 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02033 Vimu-Chr1 27883906 27885797 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02033 - - pvu:PHAVU_001G074200g 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02725 10 38640419 38641928 Vimu1g02033 1 27883906 27885797 PCT