Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0765 ATGAACACCGTGACTTTGCCCAACTCATCCACCAAAATTTGCTCTATTGCTGCAGGGGAAGCACATACTCTTATTCTTACTGGGGATGGACGTGTTTATTCTTGGGGAAGAGGAATACTGGGGCGGCTTGGTGGAGGTTCTGAGCACGACCACCATCTTCCCGTTCAACTCAGGTTTGGATCAGAAGAACGCAGCGTCAAAATAGTGGGAATTGCCGCCGGTGCTTATCATAGCCTTGCCGTAGCAGTGCCCTGCTTATTAAATAAGTTTCTCGACTTGCACCCTCCTATTTCTTCATCAACGTCAACTATTTCAGAAGCAGGAGATGAGTCATCATTAAAGATAACTGTTGTCAAAGCAGGAGGAATGATGTCTATGTGTATTGATAATCTTGGTGCCCTATGGATGTGGGGAAATTGTCCTGGAGAAAACAAAGAAGGTGGCGTCTCTCTTGTAACCAACTTCACTCCCACACCAGTATGGGATTTTCATGGTCACATTGTAGTTCAAGTAGCATGTGGAAAGGAGCATGTTGTGGCTCTCGTTACTGCTGGAGAATCATTCAAGGGTGTGGATGATCTAGTGTGCTATACTTGGGGTAACAACAATCATGGTCAATTAGGTTTGGGGGACAAGGAGAATAGGCCACAACCTGAAGTGGTGAAAACATTTGATTTGGAGTCCCCTTGGGTAATTTATGAGGTAACATGTGGTGCCTTTCACACTGCTTTGCTCACTCGCAACAAGAGTCCTAGTGAGACATTTGGAAGCACATGTTGGACATTTGGCCTTGGGGATAATGGACAACTTGGGCATGGTACAACTTTAAGCAAATTACTTCCTGAACCTGTTAAAGAATTGCCACAAAATGTGCATCTTGTTTCAGTTGACTGTGGCTTGTTTCATACTTGTGTTGTTTCCTTTGATGGGTATGTATGGTCATGGGGAATGGAGAAAGGTCTTGGCTTATGCCCTGATGATAGTAATGGTGGAATACATTCTGGTGATGCTCTTTCTCCCTATCTTATCTCATGCAATCCATATGAGCCCAAATTTCCAAAACCAATTCAAGTTGCATGCGGAGCTGCACACACTGTTATTGTTGCACAAGAGGGATACAAGCTTTGGTCTTGGGGTAGAGGAAGGAGTGGGGTTCTTGGAAATGGTAAGACTATTGATAGTTACACTCCCACCATTGTGTTATGGCCTCCACTGATGAAAGATTTCGAACAAGAGGAATTACATAACTCTGGTGAGCATGATAAAACGGAGAGTGAAGAAGTTAGTGAGACAAATGACAAATTATCTTCAGCATTGAACAAAGTGAAGCTACTTCAAACAAAGTTATCCATAGTGGAAAGATATGCCAGTGTGCTTCATGGTTCTATCTTTGGAGAACCTTTTGATGAACAAAATATTCCTCTTTCGTTGCAAAATTCAGATGCATTTGACATTTCAAAGGAATGGAAGAACATTTTAGAGACATTAGATTGTACAAAGCTAAGTAAGTTGGAAATGCTCTACCAAAATATGCTTGTTGCTGTGAAAGATAAGCTAATGAAAAAAAAGATTAAAGAGATTATAAATGAATATATATCCTCTTCAAATGTAAAGAATGAGTAA 1623 0.414 MNTVTLPNSSTKICSIAAGEAHTLILTGDGRVYSWGRGILGRLGGGSEHDHHLPVQLRFGSEERSVKIVGIAAGAYHSLAVAVPCLLNKFLDLHPPISSSTSTISEAGDESSLKITVVKAGGMMSMCIDNLGALWMWGNCPGENKEGGVSLVTNFTPTPVWDFHGHIVVQVACGKEHVVALVTAGESFKGVDDLVCYTWGNNNHGQLGLGDKENRPQPEVVKTFDLESPWVIYEVTCGAFHTALLTRNKSPSETFGSTCWTFGLGDNGQLGHGTTLSKLLPEPVKELPQNVHLVSVDCGLFHTCVVSFDGYVWSWGMEKGLGLCPDDSNGGIHSGDALSPYLISCNPYEPKFPKPIQVACGAAHTVIVAQEGYKLWSWGRGRSGVLGNGKTIDSYTPTIVLWPPLMKDFEQEELHNSGEHDKTESEEVSETNDKLSSALNKVKLLQTKLSIVERYASVLHGSIFGEPFDEQNIPLSLQNSDAFDISKEWKNILETLDCTKLSKLEMLYQNMLVAVKDKLMKKKIKEIINEYISSSNVKNE* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0765 540 PRINTS Chromosome condensation regulator RCC1 signature 31 47 IPR000408 -
Pvu1g0765 540 PRINTS Chromosome condensation regulator RCC1 signature 68 81 IPR000408 -
Pvu1g0765 540 PRINTS Chromosome condensation regulator RCC1 signature 132 148 IPR000408 -
Pvu1g0765 540 PRINTS Chromosome condensation regulator RCC1 signature 171 187 IPR000408 -
Pvu1g0765 540 PRINTS Chromosome condensation regulator RCC1 signature 299 317 IPR000408 -
Pvu1g0765 540 PRINTS Chromosome condensation regulator RCC1 signature 368 389 IPR000408 -
Pvu1g0765 540 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 82 538 - -
Pvu1g0765 540 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 4 82 - -
Pvu1g0765 540 SUPERFAMILY RCC1/BLIP-II 9 81 IPR009091 -
Pvu1g0765 540 Gene3D - 2 83 IPR009091 -
Pvu1g0765 540 SUPERFAMILY RCC1/BLIP-II 110 405 IPR009091 -
Pvu1g0765 540 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 30 84 IPR000408 -
Pvu1g0765 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 4 82 - -
Pvu1g0765 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 82 538 - -
Pvu1g0765 540 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 194 248 IPR000408 -
Pvu1g0765 540 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 257 309 IPR000408 -
Pvu1g0765 540 Pfam Regulator of chromosome condensation (RCC1) repeat 197 245 IPR000408 -
Pvu1g0765 540 Pfam Regulator of chromosome condensation (RCC1) repeat 29 81 IPR000408 -
Pvu1g0765 540 Pfam Regulator of chromosome condensation (RCC1) repeat 259 306 IPR000408 -
Pvu1g0765 540 Pfam Regulator of chromosome condensation (RCC1) repeat 309 367 IPR000408 -
Pvu1g0765 540 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 235 245 IPR000408 -
Pvu1g0765 540 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 310 371 IPR000408 -
Pvu1g0765 540 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 132 184 IPR000408 -
Pvu1g0765 540 Gene3D - 92 434 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0765 Pvu-Chr1 10134484 10139961 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0765 - - pvu:PHAVU_001G074200g 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1128 9 16531500 16535386 Pvu1g0765 1 10134484 10139961 PCT