Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00876 atgggTATTCCTTCGGAGCTTAGAGATGTTTGGGTCTCCAAAAGAAATTCTTTTATTATTGCTTCTCCTGATGAAGAGAGGAAGCTTTTAAGGACTAAAATATGTACTAATGAAGGTGTGCGTGCTGGATTCAAGGCAGCTGCCGTTGCATGTGTAGTCAGTACTGTGCCAACATTGGCTGCTGTTCGCATGATTCCATGGGCAAAAGCAAACCTCAATTATACCGCTCAGGCACTTATCATATCTGCTGCATCCATTGCAGCATACTTCATCACTGCTGATAAAACTATCTTGGAATGCGGTGTCCGAGCTTTGGGGTGCGTGGGAAGGTTTGAAACTGCATGGGAGCTTGGTTACAAACATGTAGAGTTGCGTCTGGATGCTTATATTGTGGTCAAGGCAACCAATAAAGAGGTCGTGATGCAGGTGGAAGGCTGGAATTTGTGCAAGAGAATATGGAGGTTGCTAGAGTTTGAGTGGAAAGTCCGAGTCAATCATACTTATTGTGAGGCCAACTTATGTGCAGATCGGCTTGCTCATGTTGGAAGCGATTTGAGTTTTACTATGACTGTTTATGAGTCGTGTCCGATTTTATGGGACCAATGCCCCAAGACTAGTTACTTTGATTACGGCGACGCCATTTACGTCCGTCACGCCGCCGTTTCGTCCTGTGTATCAGTAGCAATGGCAATTTCAGAAGAAGAAGTTCTCAAATCATCCGATGATTCAAATGCAACAAAAACTCATCAATCATTGAGTGTTGAACAGAGGTTTGAGATCATAAGGAGCATTGGTGAAGAGTGCATTCAAGATGATGAACTTCGTAATCTCCTTGCAAATAAGCCTGATATTGTTTGTTATGATGGTTTTGAACCTTCCGGAAGAATGCACATTGCTCAGGGTGTTTTGAAAACAATTAATGTGAACAAGCTAACGTCTGCCGGTTGTCAAGTCAAAATATGGGTTGCTGATTGGTTTGCTAAGCTTAACAAGAAAATGGGGGGAGATTTAAAGAAAATTGAGACGGTTGGCGAGTACCTCATCGAAATTTGGAAAGCCAGTGGGATGGATCTTGAAGGAGGGAAAGTTGAGTTTTTGTGGTCGTCTAAAGAGATTAATGCCGGAGCTGATAAGTACTGGCCTCTTGTGTTGGACATAGCTCAGAAGTTTAGGCTTAAAAGGATTATCAGGTGTAGCCAAATAATGGGACGAAGTGAGCATGAAAATTTGGCTGCTTCTCAAATAATGTATCCATGCATGCAGTGTGCCGACATATTTTTCCTCAAGGCCGACATCTGCCAATTGGGAATGGATCAGCGAAAAGTAAATGTGCTTGCCAGAGAGTATTGTGATCTTATTAAGAGGAAGAACAAACCTATAATATTGTCACACCACATGTTACCTGGTCTGAAGCAAGGCCAGGAAAAAATGTCCAAAAGTAACCAATCGTCGTCCATTTTCATGGAAGATGACAAGggtgaagtgaagaagaaaataaatagtttttattGCCCACCAAAGATTGTTGAGGGAAACCCATCCTTTGACTACATTAAGCGCGTTGTCTTACCATGGTTTAACGAGTTTACTGTGGAGCGTAGTGATAAAAATGGTGGGAATAAAACGTTCAAAAGCTTTGAAGAGGTGGTTGCTGACTATGAAACTGGAGAGTTACACCCGAAGGACCTTAAACAAGCTTTGTCGGCATCATTGAATAAAATTCTTGAGCCTGTTAGGAAACACTTTGAAAACGACAAGGATGCTATAGAGCTACAGAAACAATTCAAGGCTTGCAAAATCCCCAAGTAA 1809 0.4135 MGIPSELRDVWVSKRNSFIIASPDEERKLLRTKICTNEGVRAGFKAAAVACVVSTVPTLAAVRMIPWAKANLNYTAQALIISAASIAAYFITADKTILECGVRALGCVGRFETAWELGYKHVELRLDAYIVVKATNKEVVMQVEGWNLCKRIWRLLEFEWKVRVNHTYCEANLCADRLAHVGSDLSFTMTVYESCPILWDQCPKTSYFDYGDAIYVRHAAVSSCVSVAMAISEEEVLKSSDDSNATKTHQSLSVEQRFEIIRSIGEECIQDDELRNLLANKPDIVCYDGFEPSGRMHIAQGVLKTINVNKLTSAGCQVKIWVADWFAKLNKKMGGDLKKIETVGEYLIEIWKASGMDLEGGKVEFLWSSKEINAGADKYWPLVLDIAQKFRLKRIIRCSQIMGRSEHENLAASQIMYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDLIKRKNKPIILSHHMLPGLKQGQEKMSKSNQSSSIFMEDDKGEVKKKINSFYCPPKIVEGNPSFDYIKRVVLPWFNEFTVERSDKNGGNKTFKSFEEVVADYETGELHPKDLKQALSASLNKILEPVRKHFENDKDAIELQKQFKACKIPK 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00876 602 Gene3D - 98 191 IPR036397 GO:0003676
Tsu01g00876 602 SUPERFAMILY Nucleotidylyl transferase 255 587 - -
Tsu01g00876 602 Pfam tRNA synthetases class I (W and Y) 281 576 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tsu01g00876 602 Pfam Reverse transcriptase-like 111 180 IPR002156 GO:0003676|GO:0004523
Tsu01g00876 602 Gene3D HUPs 268 395 IPR014729 -
Tsu01g00876 602 Pfam Early nodulin 93 ENOD93 protein 28 101 IPR005050 -
Tsu01g00876 602 PANTHER BNAANNG11300D PROTEIN 229 597 - -
Tsu01g00876 602 Gene3D HUPs 406 599 IPR014729 -
Tsu01g00876 602 PANTHER TYROSINE-TRNA LIGASE 229 597 - -
Tsu01g00876 602 CDD RNase_H_like 98 180 IPR044730 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00876 Tsu-Chr1 7946039 7963898 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00876 K01866 - gmx:100806939 576.63