Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1142 ATGGACACCGCGACTTTGCCCAACTTATCCACTAAAGTTTGCTCCATTGTTGCAGGGGAAGCACACACTCTTATTCTCACCGGGGATGGCCGTGTTTATTCTTGGGGAAGAGGAATACTGGGGCGGCTTGGCGGAGGTTCAGAACACGACGACCATCTTCCCGTTCGAGTCAGGTTTGGATCAGAAGAATACAGACTCAGAATAGTGGGAATCGCCGCTGGTGCTTATCATAGCCTTGCGTTAGCAGATGATGGATCTGTTTGGTGTTGGGGCTACAATATATATGGTCAACTTGGTATCAATGGAGAGGACTTCCATGGTGAAAAACATAGCGATGGTGACTATTCTATAGTGCCATGCTTATTGAATAAGTTTCTCGACTTGAACCCTCCTGTTTCTTCATCAACATCAACTATTCCAGAAGCAGAAAACGAATCATCATTAAAGATAACTGTTGTGAAAGCAGGAGGAATGATGTCTCTGTGTATTGATAATCTTGGTGCCCTCTGGATGTGGGGACATTGTCCTGGAGAAAACAAAGAAGGTGGCGTCTCTCTTATAAGCAACTTCACTCCAACACCAGTGTGGGATTTTCATGGTCACATTGTAGTTCAAGTAGCATGTGGAAAGGAACATGTTGTGGCACTTGTTACTGCTGGAGAATCATACAAGGGTGTGGATGATCTAGTGTGCTATACTTGGGGTAACAACAGTCATGGTCAATTAGGGTTGGGGGATAAGGAGAATAGGCCAAGACCTGAAGTGGTAAAAACATTTGACCTGGAGTCCCCTTGGGTAATTTATGAGGTAACATGTGGTGCTTTTCACACTGCTTTGCTCACTCACAGAAAGAGGTCTAGTGACACATTAGAAAGCACATGTTGGACATTTGGCCTTGGGGATAATGGACAACTTGGACATGGTACAACACAAAGCAAATTTCTTCCTGAACCTGTTAAGGAATTGCCACAAAATGTTCATCTGGTTTCTGTTGACTGTGGCTTGTTTCATACTTGTGTTGTTTCAATTGATGGGTATGTATGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGATAGTAATGGTGGAACACATTCTGGTGATGCTCTTTCTCCCCTTCTTATCTCATGCAATCCATATCAGACTGAATTTCCAAAACCTATTCAAGTTGCATGCGGAGCTGCACACACTGTTCTTGTTGCGCAAGAGGGATATAAACTTTGGTCTTGGGGTAGAGGAAGGAGCGGGGTTCTTGGAAATGGTAAAACTACGGATAGTTACACTCCCACCATTGTGTTATGGCCTCCACTGATTCAAGATTTCGAACAAGAGAAATCACATAGCTCCGGAGAGCATGATAAAAAGGAGAGTGAAAGAGTCACTGAGACAAACGACAAATTATCTTCAGCACTGAACAAAGTGAAGCTACTTCAAACAAAGTTATCTGTAATGGAAAGATATGCGAATATGCTTCATGGTTTTATCTTTGGAGAACCTTTTGATGAACAAGATATACCTTCTTCATTCCAAAATTCTGGTGAATTTGGTATTTCAAGGGAATGGGAGAACATTTTAGAGGCTGCAGATAATACAAAGCTAAGTAAGTTGGAAATGGTCTACCAAAATATGCTTGCTGCTGTGAAAGATAAGCTAATGAAAAGAAGGATTAAGGAGATTGTAAATGAATGCCTATCCTCCTCACATGCCGAAAATGAGCATATATAA 1734 0.4239 MDTATLPNLSTKVCSIVAGEAHTLILTGDGRVYSWGRGILGRLGGGSEHDDHLPVRVRFGSEEYRLRIVGIAAGAYHSLALADDGSVWCWGYNIYGQLGINGEDFHGEKHSDGDYSIVPCLLNKFLDLNPPVSSSTSTIPEAENESSLKITVVKAGGMMSLCIDNLGALWMWGHCPGENKEGGVSLISNFTPTPVWDFHGHIVVQVACGKEHVVALVTAGESYKGVDDLVCYTWGNNSHGQLGLGDKENRPRPEVVKTFDLESPWVIYEVTCGAFHTALLTHRKRSSDTLESTCWTFGLGDNGQLGHGTTQSKFLPEPVKELPQNVHLVSVDCGLFHTCVVSIDGYVWSWGMEKGLGLCPDDSNGGTHSGDALSPLLISCNPYQTEFPKPIQVACGAAHTVLVAQEGYKLWSWGRGRSGVLGNGKTTDSYTPTIVLWPPLIQDFEQEKSHSSGEHDKKESERVTETNDKLSSALNKVKLLQTKLSVMERYANMLHGFIFGEPFDEQDIPSSFQNSGEFGISREWENILEAADNTKLSKLEMVYQNMLAAVKDKLMKRRIKEIVNECLSSSHAENEHI* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1142 577 MobiDBLite consensus disorder prediction 446 467 - -
Vra6g1142 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 167 219 IPR000408 -
Vra6g1142 577 MobiDBLite consensus disorder prediction 447 466 - -
Vra6g1142 577 Pfam Regulator of chromosome condensation (RCC1) repeat 29 81 IPR000408 -
Vra6g1142 577 Pfam Regulator of chromosome condensation (RCC1) repeat 84 163 IPR000408 -
Vra6g1142 577 Pfam Regulator of chromosome condensation (RCC1) repeat 294 341 IPR000408 -
Vra6g1142 577 Pfam Regulator of chromosome condensation (RCC1) repeat 232 280 IPR000408 -
Vra6g1142 577 Pfam Regulator of chromosome condensation (RCC1) repeat 344 403 IPR000408 -
Vra6g1142 577 SUPERFAMILY RCC1/BLIP-II 144 438 IPR009091 -
Vra6g1142 577 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 5 571 - -
Vra6g1142 577 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 71 81 IPR000408 -
Vra6g1142 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 30 84 IPR000408 -
Vra6g1142 577 SUPERFAMILY RCC1/BLIP-II 8 103 IPR009091 -
Vra6g1142 577 Gene3D - 227 477 IPR009091 -
Vra6g1142 577 Gene3D - 2 226 IPR009091 -
Vra6g1142 577 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 5 571 - -
Vra6g1142 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 345 406 IPR000408 -
Vra6g1142 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 292 344 IPR000408 -
Vra6g1142 577 PRINTS Chromosome condensation regulator RCC1 signature 31 47 IPR000408 -
Vra6g1142 577 PRINTS Chromosome condensation regulator RCC1 signature 68 81 IPR000408 -
Vra6g1142 577 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Vra6g1142 577 PRINTS Chromosome condensation regulator RCC1 signature 167 183 IPR000408 -
Vra6g1142 577 PRINTS Chromosome condensation regulator RCC1 signature 206 222 IPR000408 -
Vra6g1142 577 PRINTS Chromosome condensation regulator RCC1 signature 334 352 IPR000408 -
Vra6g1142 577 PRINTS Chromosome condensation regulator RCC1 signature 403 424 IPR000408 -
Vra6g1142 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 229 283 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1142 Vra-Chr6 18157388 18172203 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1142 - - gmx:100801214 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1024 5 16644765 16647898 Vra6g1142 6 18157388 18172203 PCT