Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1139 ATGTCAAAGGCGGTGGTTTATATCCTAATAGCCACCGCCGTGTTGTTCTACAAATGCTTGTTCCCGTTGAGCCAAGATGAACCAAAGGGTCGTCTTAATCGCAGGTTTGGGTACAAGCTACTTGAACGAGCACCCAACTTTGACCCTCTTGTGGCAGATATTGAGAGAGAGGTTGAAAAGAAAACCACACATTCGGAACCTGTTCCTCGTACGTCGACCACTTTGGACACTACCACGTCGCCCAATGATGTTTCAGGGACATACCAATATCTTACATCTGGCGGTAAATTGAACACCACGTTAAGGTTGATCATCTTGTTCCCTTTGTTAGATAGAGAACCCAAAGATGGGGTGGTTGGTTTTGAAGAGTTAGAGGCATGGGTTACTCAGCGAGCATCAGAGAGATTAGATTATCTCACACAAGCAGAGCTTGATTCCAAAGACAAGAATGGGGATTTGGCCATTTCTTTTAAGGAGTATTTACCTCAGTTTTCTGAAAAGCGTATAGAGGAAAACAAAATGCTGCATGGCGAAGCAGGATGGTGGAAAGAAAGATTTGAAGTTGCAGACGTTGATCACAATGGACTTCTGAACTTCACTGAACTTAGAGATTTTTTGCATCCAGAAGATAGCGACAATAAAGAAACGCTAAAGTGGATGTTGAGAGATAGGCTAAAGCGCAAGGGCGATGAAAAAGATGGGAAAATGAACTTTAATGAATTTGTAGATCATGTATATGGTACATACGAAAGTTATATGACCTTCGAAACTCACGGAGGATCGATACCTTCTCCAGAAGAGGAATTTTTCCAGCTTGATGTAAACAAAGATAAGTTTTTGTCACCAGAAGAATTGCTACCAATACTTTCTTATATCTACCCTGGCGAGCTAGCTTATGCTAAGTATTTCACATGCTTTTTGATGAATGAGGCTGATGATAATGGAGATAGAAAGTTGACACTAAAAGAGATGCTTGATCATGAATCTGTTTTTTACAGTACAGTTCATGTAGATGGCCACCAAGAAAGTGACGATGAACATGATGAGCTTTGA 1053 0.4103 MSKAVVYILIATAVLFYKCLFPLSQDEPKGRLNRRFGYKLLERAPNFDPLVADIEREVEKKTTHSEPVPRTSTTLDTTTSPNDVSGTYQYLTSGGKLNTTLRLIILFPLLDREPKDGVVGFEELEAWVTQRASERLDYLTQAELDSKDKNGDLAISFKEYLPQFSEKRIEENKMLHGEAGWWKERFEVADVDHNGLLNFTELRDFLHPEDSDNKETLKWMLRDRLKRKGDEKDGKMNFNEFVDHVYGTYESYMTFETHGGSIPSPEEEFFQLDVNKDKFLSPEELLPILSYIYPGELAYAKYFTCFLMNEADDNGDRKLTLKEMLDHESVFYSTVHVDGHQESDDEHDEL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1139 350 Gene3D - 263 330 - -
Vra6g1139 350 ProSitePatterns EF-hand calcium-binding domain. 273 285 IPR018247 -
Vra6g1139 350 ProSitePatterns EF-hand calcium-binding domain. 312 324 IPR018247 -
Vra6g1139 350 PANTHER RETICULOCALBIN 1 350 - -
Vra6g1139 350 MobiDBLite consensus disorder prediction 67 81 - -
Vra6g1139 350 ProSitePatterns EF-hand calcium-binding domain. 190 202 IPR018247 -
Vra6g1139 350 SUPERFAMILY EF-hand 180 329 IPR011992 -
Vra6g1139 350 MobiDBLite consensus disorder prediction 58 81 - -
Vra6g1139 350 Gene3D - 96 247 - -
Vra6g1139 350 SUPERFAMILY EF-hand 102 207 IPR011992 -
Vra6g1139 350 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 350 - -
Vra6g1139 350 ProSiteProfiles EF-hand calcium-binding domain profile. 177 212 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1139 Vra-Chr6 18020830 18023600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1139 1 311 EF-hand Containing Proteins AT4G27790 39.683 4.77e-79 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1139 K23901 - gmx:100801332 550.821