Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5714 ATGACAAAGGCGGTGGTGGTAATTTATATCCTAGTAGCCACCGCCACATTGTTCATGATCGCCATCCTATCTCCGCCGGTGAACTTTAATAAAGAGGGAGATAAAGACCGCCTTAACCGCCGGTTCGGATACAAAATCATACTCGAACGCGCGCCAAAATTTGACCCTCTTTTGACAAACATTGATAGAAAGGAAGCACAAAATATTAATATCAATAATGCTGTTGTTCCTAGGCGTTTGGACAGCACCACCTCAGCGAGTGAGGTTGCGGAGACTTACCAATATCTAATCTCTGGCGGCACGTTAAACACGACATTGAGGTTGATCATTTTGTTCCCATTGTTGGATAGAGATCCCAAAGATGGTGTGGTTGTTTTCAATGAGTTAGAGGCTTGGATTACCCAAAGAGCTGTGGAGAGATTGGATTTATTAACCCAGGCTGAGTTTGATTCCAAGGACAAGAATGGGGATTCTGCTATCTCTTTTCAAGAGTATCTGCCTCAGTTTTCTCAACATGATATAGAGAGAAAAGAAATGGGGCATGGTGAAGCAGGATGGTGGATGCAAAAATTTGAAATTGCGGACATTGATTTCAATGGACTGCTTAACTTCACCGAGCTTAGAGATTTTTTGCACCCAGAAGACAGCAAAAATCAACAAATGCTGAAATGGATGATCACTGATAGAGTTAAGCTTATGCACCCTGAAAATGATGGGAAATTGAATTTCGATGAATTTAAAGACCATGTTTATAACACCTATTCAAGTTATATGGACTTTGAAACTAGCGGAGGGAACATACCTGATCCAGAGGATAAATTTGCTCAGCTAGATGTGAACAAGGACCAATTCTTGACACCAGAAGAATTGATACCTATAGTTCCTTACCTCTACCCCGGAGAGCTGGCTTATGCTAAATATTTCACATACTATTTAATTAGTGAGGCTGATGAGAATGGAGATAAAAAGTTGTCACTCGAGGAAATGTTGAATCATGAATTTATTTTCTACAACACAGTTCATGCGGATGATGATCCGGAAGGCGAAGAAGATCATGACGAACTTTGA 1068 0.4073 MTKAVVVIYILVATATLFMIAILSPPVNFNKEGDKDRLNRRFGYKIILERAPKFDPLLTNIDRKEAQNININNAVVPRRLDSTTSASEVAETYQYLISGGTLNTTLRLIILFPLLDRDPKDGVVVFNELEAWITQRAVERLDLLTQAEFDSKDKNGDSAISFQEYLPQFSQHDIERKEMGHGEAGWWMQKFEIADIDFNGLLNFTELRDFLHPEDSKNQQMLKWMITDRVKLMHPENDGKLNFDEFKDHVYNTYSSYMDFETSGGNIPDPEDKFAQLDVNKDQFLTPEELIPIVPYLYPGELAYAKYFTYYLISEADENGDKKLSLEEMLNHEFIFYNTVHADDDPEGEEDHDEL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5714 355 ProSiteProfiles EF-hand calcium-binding domain profile. 265 300 IPR002048 GO:0005509
Lja1g5714 355 SUPERFAMILY EF-hand 106 251 IPR011992 -
Lja1g5714 355 PANTHER RETICULOCALBIN 1 355 - -
Lja1g5714 355 ProSitePatterns EF-hand calcium-binding domain. 278 290 IPR018247 -
Lja1g5714 355 Gene3D - 82 254 - -
Lja1g5714 355 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 355 - -
Lja1g5714 355 Gene3D - 266 334 - -
Lja1g5714 355 ProSiteProfiles EF-hand calcium-binding domain profile. 182 217 IPR002048 GO:0005509
Lja1g5714 355 SUPERFAMILY EF-hand 231 332 IPR011992 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5714 4 316 EF-hand Containing Proteins AT4G27790 38.679 4.57e-75 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5714 K23901 - gmx:100806007 487.648