Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre1g00938 | ATGGAAGATGTTGCCAGCTCCGGTAACTTACCATTTAAGGTAACCGCCGTCGCTGCGGGGGAAGCACATACTCTCCTTCTTACTGGTGATGGACGTGTATATTCTTGGGGAAGAGGAACATTAGGAAGACTTGGTTTGGGTTCAGAAGAAGACCAAATTTTTCCAGCTCAAGTAAAGTTTGGATCACAGGACTCTGTTAGAATAGTAGGAATTGCTGCTGGTGCATATCATAGTCTAGCTCTTGCAGATGATGGATCTGTTTGGTGCTGGGGTTACAATTTATATGGATATTATTCTGTAGTTCCTTGCTTATTGAACAAGTTTCTTGAGTTGCATCCCCCAGATTCTTCAACCTTATTGTTAGAAGAAGCAGAAGGGAAAACACCACTAAAGATAATTTCTATCAAAGCAGGAGGAATGATGTCACTATCTATTGACAATCTTGGTGCCCTATGGATGTGGGGAAACAGTCCTAATCAAAGCAAAGAAGGTATATTCTCAATAGTAAACAATTTGACTCCGACACCGGTTTGGGATTTCTATGGTCACACAGTAGTAAAAGTTGCATGTGGAAATGAACACATTATAGCACTAGTTAGTGTTGGAGAATCATACAATGGTGAAAATGATGATCTCATTTGTTACTCTTGGGGTACAAACAATCATGGTCAATTAGGTTTAGGTGATAAAGAAAATAGACCAAATCCAGAAATTATAAAAACATTTGATCAAAATTCTCATTGGTCAATTTATGATATAGCATGTGGTGCTTTTCACACTGCTTTGTTAACTCATAGAAAAAGACCTAATGATGATACATTAGAGAGTGTATGTTGGACATTTGGTCTTGGTGAAAATGGACAACTTGGTCATGGAACAACACAAAGTTCATTAATTCCTGAACTTGTTCAAGAATTGCCAAAATTTGTAAACCTTGTTTCTATTGATTGTGGTTTGTTTCATACTTGTGTTGTTTCGTCGGATGGAGATGTTTGGTCGTGGGGAATGGAGAAGGGTCTTGGTTTATATCCTGATGCGCGAGTTGTTGGTGAATATTCTAGTGACGCTCTTTCTCCGCTTGTTGTAAGTAATCCTTATGAGGCTAAATTTTTGGAACCGGTTCAAGTCGCGTGTGGCGCGGCTCATACTATTATTGTTGCTCAAGAGGGATATAGGATTTGGTCTTTGGGAAGAGGAAGAAGTGGTGTTCTTGGAAATGGTAAGGTAATTGATTGTTACACTCCTACTTTAGTGTTGTGGCCTCCATTGATGGAAGATTTTCATTTCAAACAAGAGGAACTGTCGAGTTTTCGCGAACAAGGTAAGGGAGAAGAAGAAGACTAA | 1344 | 0.3921 | MEDVASSGNLPFKVTAVAAGEAHTLLLTGDGRVYSWGRGTLGRLGLGSEEDQIFPAQVKFGSQDSVRIVGIAAGAYHSLALADDGSVWCWGYNLYGYYSVVPCLLNKFLELHPPDSSTLLLEEAEGKTPLKIISIKAGGMMSLSIDNLGALWMWGNSPNQSKEGIFSIVNNLTPTPVWDFYGHTVVKVACGNEHIIALVSVGESYNGENDDLICYSWGTNNHGQLGLGDKENRPNPEIIKTFDQNSHWSIYDIACGAFHTALLTHRKRPNDDTLESVCWTFGLGENGQLGHGTTQSSLIPELVQELPKFVNLVSIDCGLFHTCVVSSDGDVWSWGMEKGLGLYPDARVVGEYSSDALSPLVVSNPYEAKFLEPVQVACGAAHTIIVAQEGYRIWSLGRGRSGVLGNGKVIDCYTPTLVLWPPLMEDFHFKQEELSSFREQGKGEEED | 447 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre1g00938 | 447 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 71 | 81 | IPR000408 | - | |
| Trre1g00938 | 447 | PRINTS | Chromosome condensation regulator RCC1 signature | 188 | 204 | IPR000408 | - | |
| Trre1g00938 | 447 | PRINTS | Chromosome condensation regulator RCC1 signature | 68 | 81 | IPR000408 | - | |
| Trre1g00938 | 447 | PRINTS | Chromosome condensation regulator RCC1 signature | 386 | 407 | IPR000408 | - | |
| Trre1g00938 | 447 | PRINTS | Chromosome condensation regulator RCC1 signature | 32 | 48 | IPR000408 | - | |
| Trre1g00938 | 447 | PRINTS | Chromosome condensation regulator RCC1 signature | 318 | 336 | IPR000408 | - | |
| Trre1g00938 | 447 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 149 | 201 | IPR000408 | - | |
| Trre1g00938 | 447 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 13 | 96 | - | - | |
| Trre1g00938 | 447 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 31 | 84 | IPR000408 | - | |
| Trre1g00938 | 447 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 276 | 328 | IPR000408 | - | |
| Trre1g00938 | 447 | Gene3D | - | 3 | 210 | IPR009091 | - | |
| Trre1g00938 | 447 | Gene3D | - | 211 | 435 | IPR009091 | - | |
| Trre1g00938 | 447 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 212 | 266 | IPR000408 | - | |
| Trre1g00938 | 447 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 329 | 389 | IPR000408 | - | |
| Trre1g00938 | 447 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 328 | 385 | IPR000408 | - | |
| Trre1g00938 | 447 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 30 | 81 | IPR000408 | - | |
| Trre1g00938 | 447 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 215 | 263 | IPR000408 | - | |
| Trre1g00938 | 447 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 279 | 325 | IPR000408 | - | |
| Trre1g00938 | 447 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 253 | 263 | IPR000408 | - | |
| Trre1g00938 | 447 | SUPERFAMILY | RCC1/BLIP-II | 125 | 423 | IPR009091 | - | |
| Trre1g00938 | 447 | SUPERFAMILY | RCC1/BLIP-II | 12 | 98 | IPR009091 | - | |
| Trre1g00938 | 447 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 188 | 198 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre1g00938 | Trre-Chr1 | 7105356 | 7107799 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre1g00938 | - | - | psat:127091439 | 800.816 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre5g05450 | 5 | 55173310 | 55174226 | Trre1g00938 | 1 | 7105356 | 7107799 | PCT |