Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0010 ATGGAAGATGTTGCAAACTCCGGCAACTTACCTTTTAAAGTAACCGCCGTAGCTGCAGGGGAAGCACATACTCTTCTTCTCGCAGGGGATGGGCGTGTATATTCTTGGGGAAGAGGAACATTAGGAAGACTTGGTTTAGGTTCAGAACAAGACCAACTTTTTCCAGCTCAAGTCAAGTTTGGATCACAAGAATCTATCAGAATAGTGGGAATTGCTGCTGGTGCATATCATAGTCTAGCTCTTGCAGATGATGGATCTGTTTGGTGCTGGGGTTACAATTTATATGGTCAACTTGGTATAATCAATGAAGAGGATGCCCACAACCCAAAATATACAGATGGATATTATTCTGTTGTTCCTTGCTTGTTGAACAAGTTTCTTGAGTTGCATCCCCCAGATTCTTCAACCTTATTGTTAGAAGAAGTAGAAGGGAAAGCACAACTAAAGATAATTTCTATCAAAGCAGGAGGAATGATGTCACTATCAATTGATAATCTTGGTGCCCTATGGATGTGGGGAAACTGTCCACATCAAAGCAAAGAAGGAATATTCTCAATAGTAAGCAATTTCACTCCAACACCAGTTTGGGATTTCCATGGTCACACAGTAGTAAAAGTTGCATGTGGAAATGAACACATTATAGCACTAGTTAGTGTTGGAGAATCATACAATGGTGAAAATGATGATCTCATTTGTTACTCTTGGGGTAACAACAATCATGGTCAATTAGGCTTAGGGGACACAGAAGATAGACCAAATCCAGAAATGGTAAAAACATTTGATCAAGATTCTCATTGGTCAATTTATGAAATAGCATGTGGTGCTTTTCACACTGCTTTGTTAACTCATAGAAAAAGGCCTAATGATGATACATTAGAAAGTGTGTGTTGGACATTTGGTCTTGGTGAAAATGGACAACTTGGTCATGGTACAACACAAAGTACATCAATTCCTGAACTTGTTCAAGAATTGCCACAATTTGTAAATCTTGTTTCTGTTGACTGTGGTTTGTTTCATACTTGTGTTGTTTCGTCGGACGGGGATGTTTGGTCGTGGGGAATGGAGAAGGGTCTTGGCTTGTATCCGGATGCGCGAGTTGTTGGTGAATATTCTAGTGATGCTCTTTCTCCGCTTGTTGTAAGTAATCCTTATGAGGCTAAGTTTTTAGAACCGGTTCAAGTCGCATGTGGCGCGGCTCATACTATTATTGTTGCTCAAGAGGGATATAAAGTTTGGTCTTTGGGAAGAGGAAGAAGTGGTGTTCTTGGAAATGGTAATGTAGTAGATTGTTACATTCCCACTTTAGTGTTATGGCCTCCACTGGTGGAAGATTTTCATTTCAAACAGGAGGAACCATCGAGTTTTCGCGAGCTAGATAAGGGAAAAGAAGAAGACTAA 1398 0.402 MEDVANSGNLPFKVTAVAAGEAHTLLLAGDGRVYSWGRGTLGRLGLGSEQDQLFPAQVKFGSQESIRIVGIAAGAYHSLALADDGSVWCWGYNLYGQLGIINEEDAHNPKYTDGYYSVVPCLLNKFLELHPPDSSTLLLEEVEGKAQLKIISIKAGGMMSLSIDNLGALWMWGNCPHQSKEGIFSIVSNFTPTPVWDFHGHTVVKVACGNEHIIALVSVGESYNGENDDLICYSWGNNNHGQLGLGDTEDRPNPEMVKTFDQDSHWSIYEIACGAFHTALLTHRKRPNDDTLESVCWTFGLGENGQLGHGTTQSTSIPELVQELPQFVNLVSVDCGLFHTCVVSSDGDVWSWGMEKGLGLYPDARVVGEYSSDALSPLVVSNPYEAKFLEPVQVACGAAHTIIVAQEGYKVWSLGRGRSGVLGNGNVVDCYIPTLVLWPPLVEDFHFKQEEPSSFRELDKGKEED* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0010 465 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 230 284 IPR000408 -
Mtr1g0010 465 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 407 IPR000408 -
Mtr1g0010 465 Gene3D - 4 227 IPR009091 -
Mtr1g0010 465 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 167 219 IPR000408 -
Mtr1g0010 465 SUPERFAMILY RCC1/BLIP-II 11 284 IPR009091 -
Mtr1g0010 465 Gene3D - 228 449 IPR009091 -
Mtr1g0010 465 Pfam Regulator of chromosome condensation (RCC1) repeat 30 81 IPR000408 -
Mtr1g0010 465 Pfam Regulator of chromosome condensation (RCC1) repeat 84 160 IPR000408 -
Mtr1g0010 465 Pfam Regulator of chromosome condensation (RCC1) repeat 233 281 IPR000408 -
Mtr1g0010 465 Pfam Regulator of chromosome condensation (RCC1) repeat 346 403 IPR000408 -
Mtr1g0010 465 Pfam Regulator of chromosome condensation (RCC1) repeat 297 343 IPR000408 -
Mtr1g0010 465 SUPERFAMILY RCC1/BLIP-II 266 436 IPR009091 -
Mtr1g0010 465 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 5 464 - -
Mtr1g0010 465 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 166 IPR000408 -
Mtr1g0010 465 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 31 84 IPR000408 -
Mtr1g0010 465 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 271 281 IPR000408 -
Mtr1g0010 465 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 294 346 IPR000408 -
Mtr1g0010 465 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 71 81 IPR000408 -
Mtr1g0010 465 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 206 216 IPR000408 -
Mtr1g0010 465 PRINTS Chromosome condensation regulator RCC1 signature 32 48 IPR000408 -
Mtr1g0010 465 PRINTS Chromosome condensation regulator RCC1 signature 68 81 IPR000408 -
Mtr1g0010 465 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Mtr1g0010 465 PRINTS Chromosome condensation regulator RCC1 signature 206 222 IPR000408 -
Mtr1g0010 465 PRINTS Chromosome condensation regulator RCC1 signature 336 354 IPR000408 -
Mtr1g0010 465 PRINTS Chromosome condensation regulator RCC1 signature 404 425 IPR000408 -
Mtr1g0010 465 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 5 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0010 Mtr-Chr1 147884 150736 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0010 - - gmx:100801214 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4090 3 54681142 54684982 Mtr1g0010 1 147884 150736 PCT