Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02020 ATGTCAAAGGCGGTGGTTTATATCCTAATAGCCACCGCCGTGTTGTTCTACAAATGCTTGTTCCCGTTGAGCCAAGATGAACCAAAGGGTCGTCTTAATCGAAGGTTTGGGTACAAGCTACTTGAACGAGCACCCAACTTTGACCCTCTTGTGGCAGATATTGAGAGAGAGGTTGAAAAGAAAACCACACATTCGGAACCTGTTCCACGTACGTCGACCACTTTGGACACTACCACGTCGACCAATGATGTTTCAGGGACTTACCAATATCTTACATCTGGCGGTAAATTGAACACCACGTTAAGGTTGATCATCTTGTTCCCTTTGTTAGATAGAGAACCCAAAGATGGGGTGGTTGGTTTTGAAGAGTTAGAGGCATGGGTTACTCAGCGAGCATCAGAGAGATTAGATTATCTCACGCAAGCAGAGCTTGATTCCAAAGACAAGAATGGGGATTTGGCCATTTCTTTTAAGGAGTATTTACCTCAGTTTTCTCAAAAGCGTATAGAGGAAAACAAAATGCTGCATGGCGAAGCAGGATGGTGGAAAGAAAGATTTGAAGTTGCAGACGTTGATCACAATGGGCTTCTGAACTTCACCGAACTTAAAGATTTTCTGCATCCAGAAGATAGCGACAATAAAGAAACGCTAAAGTGGATGTTGAGAGATAGGCTAAAGCGCAAGGGCGATGAAAAAGATGGGAAAATGAACTTTAATGAATTTGTAGATCATGTATATGGTACATACGAAACTTATATGACCTTCGAAACTCACGGAGGATCGATACCTTCTCCAGAAGAGGAATTTTTCCAGCTTGATGTAAACAAAGATAAGTTTTTGTCACCAGAAGAATTGATACCAATACTTTCTTATATCTACCCTGGCGAGCTAGCTTATGCTAAGTATTTCACATGCTTTTTGATGAATGAGGCTGATGATAATGGAGATAGAAAGTTGACACTAAAAGAGATGCTTGATCATGAATCTGTTTTTTACAGTACAGTTCATGCAGATGGCCACCAAGAAAGTGACGATGAACATGATGAGCTTTGA 1053 0.4112 MSKAVVYILIATAVLFYKCLFPLSQDEPKGRLNRRFGYKLLERAPNFDPLVADIEREVEKKTTHSEPVPRTSTTLDTTTSTNDVSGTYQYLTSGGKLNTTLRLIILFPLLDREPKDGVVGFEELEAWVTQRASERLDYLTQAELDSKDKNGDLAISFKEYLPQFSQKRIEENKMLHGEAGWWKERFEVADVDHNGLLNFTELKDFLHPEDSDNKETLKWMLRDRLKRKGDEKDGKMNFNEFVDHVYGTYETYMTFETHGGSIPSPEEEFFQLDVNKDKFLSPEELIPILSYIYPGELAYAKYFTCFLMNEADDNGDRKLTLKEMLDHESVFYSTVHADGHQESDDEHDEL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02020 350 ProSitePatterns EF-hand calcium-binding domain. 190 202 IPR018247 -
Vimu1g02020 350 SUPERFAMILY EF-hand 180 331 IPR011992 -
Vimu1g02020 350 ProSiteProfiles EF-hand calcium-binding domain profile. 177 212 IPR002048 GO:0005509
Vimu1g02020 350 PANTHER RETICULOCALBIN 80 340 - -
Vimu1g02020 350 MobiDBLite consensus disorder prediction 58 80 - -
Vimu1g02020 350 ProSitePatterns EF-hand calcium-binding domain. 312 324 IPR018247 -
Vimu1g02020 350 ProSitePatterns EF-hand calcium-binding domain. 273 285 IPR018247 -
Vimu1g02020 350 Gene3D - 263 330 - -
Vimu1g02020 350 SUPERFAMILY EF-hand 101 173 IPR011992 -
Vimu1g02020 350 Gene3D - 89 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02020 Vimu-Chr1 27693597 27695990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02020 1 311 EF-hand Containing Proteins AT4G27790 39.683 6.06e-79 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02020 K23901 - gmx:100801332 559.296