Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0828 ATGGATCCACAAAACCAGAAACCTCTCGAAATCCACCTAGTTACCGCCACCGACTCACCCGAGTTCACTTATCTGACTCGGTCTCTATCCCAAACCTCCCTTGTCGGACTCGACGCCGAGTGGAAACCCGTCCGGACTCAGCAAAAGTCGTTTCCCACCGTATCCGTACTTCAAATCGCGTGCCAACTCGGTGATGACTCGGTAGTTTTCCTTCTCGACCTTCTCTCCATTCCTCTCTCTTCGATATGGGAGCCTCTCCAAGAAATGCTGGTTTCTCCCGATATCTTGAAGCTAGGATTCAGATTCAAGCAAGATTTAGTGTATTTGTCATCCACGTTCTGTTCTCAGGGATGCAATCCCGGTTTTGATAAGGTTGAACCGTATTTGGATATTACAAGTGTGTACAATCATCTTCAGTATAAGAAACATGGAAGAAGTGTTTCGAAGCAAAATAAGAGTTTGTCAACTATTTGTGGAGAAATGTTGGGGATTTCATTATCTAAGGAGCTTCAATGTAGTGATTGGTCACAGCGTCCTCTTACAGAAGAGCAGATGACATATGCAGCTATGGATGCTCATTGCTTGCTCGGAATATTTAAGATCTTTCAGGCAAAGGTTGCCGAAGAAGGAGAGTTGGATCTCAAGACCAACAAGTTGTCTATTTCAAGTGCAAATCTTGGGTTGAAAGAGCTTTTCAAGAAGCACGATATGAGTGATAAAGTTCTTAGTACACAATTTTGTGAAGCCTTAGCAATTGTCCAAGCCACTACTTCTTCTGGTGTTGTTCAGGTGCCACCTTCAGCAGGGGAAGTGATTAAAAAGTCATCATGCCGGGATACTAAGCCAATGGATGCATTTTTGTTGAAAATTGTCAAAAAACACGGTGATACGATTTTACTAAAGGAGTCGGACAGAGAGCCGAAGACCTCCAAAAAGAAACGAAAGAAACAGTTGCCAATTAATGGAATTTCCAGAGAAAAACATATAGAGAACTTTGATGAGTGGCAAGGTACTGCACCTTGGGATCCATTACTTGGGGGAGACGGATGTCCAAAGTTCCTCTGTGATGTTATGGTTGAAGGCTTGGCAAAACATTTACGTTGTGTTGGGATAGATGCTGCAGTTCCTAATTCAAAGAAGCCTGAACCAAGGGAGTTAATAACACAAGCACAAAAAGAGAAAAGAGTGCTTTTGACACGGGATGCGAAGTTGCTAAGACATGACTATCAAATATATAAAGTGAAGGGCCTTCTAAAAAATGAACAGCTACTTGAGATTATTGAAACCTTTCAACTAAATATTAGCGAGGATCAGCTAATGTCAAGATGCACAAAATGCAATGGACAGTTTATTCAAAAGCCACTTTCCACTGAAGAGGCTATTGAAGCTGCAAAGGGTTTCCAAAAGATTCCAAGTTGCTTATTTAACAAGAATTTAGAGTTTTGGCAGTGTATGGACTGTAGCCAACTTTATTGGGAGGGAACCCAGTACCATAATGCAGTACAGAAGTTCGTTGACATTTGCAAGTTGAGTGATTAG 1539 0.4185 MDPQNQKPLEIHLVTATDSPEFTYLTRSLSQTSLVGLDAEWKPVRTQQKSFPTVSVLQIACQLGDDSVVFLLDLLSIPLSSIWEPLQEMLVSPDILKLGFRFKQDLVYLSSTFCSQGCNPGFDKVEPYLDITSVYNHLQYKKHGRSVSKQNKSLSTICGEMLGISLSKELQCSDWSQRPLTEEQMTYAAMDAHCLLGIFKIFQAKVAEEGELDLKTNKLSISSANLGLKELFKKHDMSDKVLSTQFCEALAIVQATTSSGVVQVPPSAGEVIKKSSCRDTKPMDAFLLKIVKKHGDTILLKESDREPKTSKKKRKKQLPINGISREKHIENFDEWQGTAPWDPLLGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPNSKKPEPRELITQAQKEKRVLLTRDAKLLRHDYQIYKVKGLLKNEQLLEIIETFQLNISEDQLMSRCTKCNGQFIQKPLSTEEAIEAAKGFQKIPSCLFNKNLEFWQCMDCSQLYWEGTQYHNAVQKFVDICKLSD* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0828 512 Pfam 3'-5' exonuclease 15 206 IPR002562 GO:0003676|GO:0006139|GO:0008408
Psa6g0828 512 SUPERFAMILY Ribonuclease H-like 10 214 IPR012337 -
Psa6g0828 512 CDD mut-7_like_exo 11 202 IPR037432 GO:0008408
Psa6g0828 512 Pfam Mut7-C RNAse domain 351 503 IPR002782 -
Psa6g0828 512 SMART 35exoneu6 13 207 IPR002562 GO:0003676|GO:0006139|GO:0008408
Psa6g0828 512 Gene3D - 4 211 IPR036397 GO:0003676
Psa6g0828 512 MobiDBLite consensus disorder prediction 301 320 - -
Psa6g0828 512 PANTHER 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN 6 509 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0828 K09122 - gmx:100781231 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0828 6 29106984 29112280 Psa6g0828 6 29106984 29112280 ECH