Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0751 . . . . . . . . . . . . . . Bisa05g0289 . . . Dere05g1574 Dod08g1472 . Glsi10g1275 . . . . . . . . . . . . . . . . . Mal1g5123 . . . . . Phco2g00824 . . Pste8g02056 . . . . . Sto5g1207 Tpr1g3095 . Tsu01g00987 . . Vimu1g02056 . Vivi4g04657 Vra6g1156
Pvu1g0752 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00825 . . . . . . . . . . . . . . Vimu1g02055 . . Vra6g1154
Pvu1g0753 Acco05g1907 Accr3g01068 Adu06g02596 . . Ahy16g3545 Ahy6g2792 . Alju07g1878 Amo16g3853 . . . . Bisa05g0267 . . . Dere05g1599 . Enph7g0710 Glsi10g1268 . . . . . . . . . . . . Lele25g0899 Lele26g0906 Lele27g1179 Lele28g0888 . Mal1g5115 . . Mibi08g1643 . . Phco2g00826 Prci2g1399 . . . . . . . Sto5g1192 Tpr1g3094 . Tsu01g00989 . . Vimu1g02053 . Vivi4g04653 Vra6g1153
Pvu1g0754 . . . Aed6g0905 . . Ahy6g2382 . . . . . . . . . . . . . . . . . . Gso13g0132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu1g02050 . . Vra6g1152
Pvu1g0755 . . Adu06g02632 . . Ahy16g2771 . Aip06g03123 . Amo16g3540 . . Arst6g03391 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00827 . . . . . . . . . . . . . . . . . .
Pvu1g0756 . . . . . . . Aip06g03074 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g5114 Mepo4g01007 Mesa1g01080 . Mtr1g0872 . Phco2g00828 . . . . . . . . . Tpr1g3093 Trre1g01054 Tsu01g00990 . . . . . Vra6g1151
Pvu1g0757 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00829 . . . . . . . . . . . . . . Vimu1g02046 . . .
Pvu1g0758 . . . . . Ahy16g2978 . . . . . . . . . . Car04g03006 . . . . . . . . . . . . . . . . . . . . . . . Mepo4g00896 . . Mtr1g0003 . Phco2g00830 . . . . . . Spst8g01792 Ssu5g0724 . . Trre1g00944 Tsu01g00892 . . Vimu1g02045 . . Vra6g1150
Pvu1g0759 . . . . . . . . . . . . . . . . . . . Dod08g1480 . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00831 . . . . . . . . . . . . . . Vimu1g02044 . . Vra6g1149
Pvu1g0760 . . . . . . . . . . . . . Bach3g01803 . Bva10g00185 Car04g03009 . . . . . . . . . . . . . . . . . . . . . . . Mepo4g00893 . . Mtr1g0006 . Phco2g00832 . . . . . . Spst8g01714 . . . Trre1g00942 Tsu01g00889 . . Vimu1g02041 . . Vra6g1588
   
Previous Page 76 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Ahy Ahy16g3545 Chr16 153011462 153017215 -
Ahy Ahy6g2792 Chr6 113707457 113713210 -
Amo Amo16g3853 Chr16 150339025 150344509 -
Vra Vra6g1588 Chr6 31339118 31344142 -
Pvu Pvu1g0751 Chr1 9829871 9836142 +
Bisa Bisa05g0289 Chr05 4565054 4568259 -
Dere Dere05g1574 Chr05 25375176 25378437 +
Dod Dod08g1472 Chr08 30402089 30405308 -
Glsi Glsi10g1275 Chr10 8594665 8597466 -
Mal Mal1g5123 Chr1 123144982 123149762 -
Phco Phco2g00824 Chr2 9453966 9461096 +
Pste Pste8g02056 Chr8 16844628 16848974 -
Sto Sto5g1207 Chr5 8146815 8152087 -
Tpr Tpr1g3095 Chr1 35460249 35465253 -
Tsu Tsu01g00987 Chr01 9031747 9035577 +
Vimu Vimu1g02056 Chr1 28590169 28591364 -
Vivi Vivi4g04657 Chr4 174785804 174788936 -
Vra Vra6g1156 Chr6 18776899 18787443 -
Pvu Pvu1g0752 Chr1 9860604 9867089 -
Phco Phco2g00825 Chr2 9465718 9471466 -
Vimu Vimu1g02055 Chr1 28564948 28578157 +
Vra Vra6g1154 Chr6 18697469 18713601 +
Pvu Pvu1g0753 Chr1 9885382 9888871 -
Acco Acco05g1907 Chr05 35522007 35526895 +
Accr Accr3g01068 Chr3 12054081 12056506 -
Adu Adu06g02596 Chr06 101483040 101488122 +
Ahy Ahy16g3545 Chr16 153011462 153017215 -
Ahy Ahy6g2792 Chr6 113707457 113713210 -
Alju Alju07g1878 Chr07 45114840 45119389 +
Amo Amo16g3853 Chr16 150339025 150344509 -
Bisa Bisa05g0267 Chr05 4165572 4168330 -
Dere Dere05g1599 Chr05 25677260 25681446 +
Enph Enph7g0710 Chr7 13058062 13061594 +
Glsi Glsi10g1268 Chr10 8548587 8553939 -
Lele Lele25g0899 Chr25 5754387 5757216 -
Lele Lele26g0906 Chr26 5820043 5822928 -
Lele Lele27g1179 Chr27 18927701 18930486 +
Lele Lele28g0888 Chr28 5733366 5736070 -
Mal Mal1g5115 Chr1 123050481 123056583 -
Mibi Mibi08g1643 Chr08 32980483 32984167 +
Phco Phco2g00826 Chr2 9477900 9480963 -
Prci Prci2g1399 Chr2 10575995 10579605 -
Sto Sto5g1192 Chr5 8040323 8043125 -
Tpr Tpr1g3094 Chr1 35451669 35456701 -
Tsu Tsu01g00989 Chr01 9067274 9072239 +
Vimu Vimu1g02053 Chr1 28509386 28513627 +
Vivi Vivi4g04653 Chr4 174701595 174706631 -
Vra Vra6g1153 Chr6 18672072 18675475 +
Pvu Pvu1g0754 Chr1 9908789 9911465 +
Aed Aed6g0905 Chr6 9900068 9902652 -
Ahy Ahy6g2382 Chr6 107832387 107837967 +
Gso Gso13g0132 Chr13 7839302 7850397 -
Vimu Vimu1g02050 Chr1 28492146 28499799 -
Vra Vra6g1152 Chr6 18646911 18652426 -
Pvu Pvu1g0755 Chr1 9912772 9914725 +
Adu Adu06g02632 Chr06 102220052 102225373 +
Ahy Ahy16g2771 Chr16 140797378 140802571 +
Aip Aip06g03123 Chr06 126678570 126683758 +
Amo Amo16g3540 Chr16 145396231 145401701 +
Arst Arst6g03391 Chr6 101414888 101420313 +
Phco Phco2g00827 Chr2 9503101 9508406 +
Pvu Pvu1g0756 Chr1 9918201 9919195 +
Aip Aip06g03074 Chr06 125798476 125798838 -
Mal Mal1g5114 Chr1 123048777 123049529 -
Mepo Mepo4g01007 Chr4 13316501 13317437 +
Mesa Mesa1g01080 Chr1 14639793 14640545 +
Mtr Mtr1g0872 Chr1 10012687 10013848 +
Phco Phco2g00828 Chr2 9517471 9518217 +
Tpr Tpr1g3093 Chr1 35449650 35450584 -
Trre Trre1g01054 Chr1 7977275 7978018 +
Tsu Tsu01g00990 Chr01 9072901 9073748 +
Vra Vra6g1151 Chr6 18638534 18639543 -
Pvu Pvu1g0757 Chr1 9934282 9934750 +
Phco Phco2g00829 Chr2 9528346 9528711 +
Vimu Vimu1g02046 Chr1 28423772 28424685 -
Pvu Pvu1g0758 Chr1 9955619 9960725 +
Ahy Ahy16g2978 Chr16 144584634 144592255 -
Car Car04g03006 Chr04 57862684 57869517 +
Mepo Mepo4g00896 Chr4 11588498 11593213 -
Mtr Mtr1g0003 Chr1 71916 76544 +
Phco Phco2g00830 Chr2 9546929 9570817 +
Spst Spst8g01792 Chr8 21588994 21593390 -
Ssu Ssu5g0724 Chr5 18386499 18393152 +
Trre Trre1g00944 Chr1 7174687 7179141 -
Tsu Tsu01g00892 Chr01 8146691 8151554 -
Vimu Vimu1g02045 Chr1 28380584 28394277 -
Vra Vra6g1150 Chr6 18552875 18591651 -
Pvu Pvu1g0759 Chr1 9990242 9991653 -
Dod Dod08g1480 Chr08 30598777 30599931 -
Phco Phco2g00831 Chr2 9586420 9587613 -
Vimu Vimu1g02044 Chr1 28326912 28327467 +
Vra Vra6g1149 Chr6 18542013 18543508 +
Pvu Pvu1g0760 Chr1 10006338 10010192 +
Bach Bach3g01803 Chr3 26422838 26425247 -
Bva Bva10g00185 Chr10 3237327 3240801 -
Car Car04g03009 Chr04 57892573 57895502 +
Mepo Mepo4g00893 Chr4 11573915 11577211 -
Mtr Mtr1g0006 Chr1 87301 91024 +
Phco Phco2g00832 Chr2 9596670 9599530 +
Spst Spst8g01714 Chr8 20418474 20421228 -
Trre Trre1g00942 Chr1 7160428 7162854 -
Tsu Tsu01g00889 Chr01 8135507 8138490 -
Vimu Vimu1g02041 Chr1 28310968 28313137 -
Vra Vra6g1588 Chr6 31339118 31344142 -
Vimu Vimu1g02045 Chr1 28380584 28394277 -
Gso Gso13g0132 Chr13 7839302 7850397 -