Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02035 ATGCCGTCGGACACCGTCGGCAACGGGGCTCTGGTCCCCCTCACCGGAGACCTGCCGACGGTATACCCTCTCCACCATGGCCTTGCCTCTCCGATTTGTAGCCTCTCCATCTCCTGGTCCCGCGGTAACACCCTCCACCTCTCCCTTTTCTCCGCCACCGCCGCCAAGGTCGTCGAAGTTAAGCTTACCAGTGAAGATCCAGAGATTCCCGATGTTCACTGGCGCCGAATTGCCTACGGCTCTGTTGCGCCCTTCGCGCTGCTTCAGAGTCGGAGAAGCTCTATTTCCGCTCTCTTGAAGACTCCTTCTCCGTATCATTCTGATTGGTGGGAGAATGTCCTTCAGTATAGCAAGGAGATAGGTTCTCTTCTAGGGGGTTCAAAGTTGCCCCCAAGTCCTATAATTGATGACTCAAAAACAATTGTTAAGAGAGATGAAGAACCAACATCTTTGAAAGCTGCATGGGAGTTAATTGAAATATTTTATGTGGACAAGCAATCTCAATCATGGCTACCTGAAAGGCTGGTTGATTGGTTAGCTGATTATGACAGCCTATTGACTAGCACACATGAAACAATTCATGGCAAGCTTGTGGATTTTCAGAAAGAACTAGTCAACATACAGGTGATTGAGGATGATCCCAGATACTGGGAATTATTATCATCTGCACTATCAGTTGGTTGGCTAGATATTGTGGTGAAAATGCTGCGGTTGCATGGATCTTACCAATTAGATCAGCTCAGTAATCGAGAGGAGTCTGAACTTGGGGTAGTTCTGCAAACCCACCATCTCGTGTTCCAGGAAAGAGAAAAATTACCCCCACCTCGAGATATGGAACACCATATTGTGCTGAAAGAAGGGGTGGACCCTATAAACTCGTGGTGCCAAGAGAGTGTCACTGCTGAAAGAGGTGCCACCGTCGAAAGAAGCACCGCCGTGAGCTCTGTTAGCTTCTCTCTCGTAAATGGGAGGGACTGCATTGCAAGAATCGCCGCTCTTGCTGGAGTTCTAGAAAATGGACTTGTAGAGACGGTTGCTACTCTTATTTCCAAAATGCCCCGCTTTCACCCTGAATCTGTTGGAAAATTAGGTGAATGCTATAAATCCAAGCCCGACTTTATCAAGAGCTGGGAAAAATGGAGGTCTCAAATTACAAAACTGGACTGCAGTCCATTCTGGATTCAATGTGATAATCAGCAAACTGTTGAGGGCCTGAGAAATTTGCTACAAATTATGCTGGGTAACACTGACAGTCTCTGCATGGCTACATGTTATTGGATTGAATTATATATTTCTCATTTTCTATACATCAGGCCATTTACAATGGGAATAGAAAGCATGTGTAGTTTGGCCCAGAAATGCATCCAGTTAAAACCACAATCTAATACCCATAGGTTGGAAGGACTTATGGTCGGAATTCTTGAGGAAAATACTGAGGTTGTTTTGGCCGAGTGTTCCAGAGAATTTGGTCCATGGTTGGTGGCACATGCCATAGAACTGTTGACTGCAGGGAGTGAGCAAGCAGAGGTTCTTCTGCATGAGCAGCGATATAACTTGGGGGGAATCAGCATAGTGGAACTACACCGGCTTGTATATGCTCAAATTCTATCATCACATGCATTGACCTGGCAGATAGCTCCAATATATTTAACATCGTGCGTGAAGCAAGGAATGGGCTTGTTAGAGAATTTATTATATAGGCAATCTATTCAACACAATAATGTGTTGCTTAAGAACATTGAGATATGCCGGTTGTATGAGCTTGATCATATTAGTTCAAACATCATGAAGCATGGTCATAAGGGTGCTGGGGTATTCTGGCTTCAACAAGCCCAAGATTCTAGTTGTCTTGATAGGATTGCCCAACAGTTGTTTGATTCTGTTGGAAAGTCAATATCTGATGAAAGCTTCAAGCAATGGGAAGGCATGATTGAACTACTGGGTTCTGAATCTAAGCCTGCTGGGGGTCTTGAATTTTTGCACAAGTATAGGGATTTCAAGAAATCCCTTCAGAAGGTCTCTGTTGGAAAATCAACTGAGATAGCCAGGCAAGCTGTAGGCTCCTTGATGCTGGTATTGCTCACACTTCTGTGA 2094 0.4503 MPSDTVGNGALVPLTGDLPTVYPLHHGLASPICSLSISWSRGNTLHLSLFSATAAKVVEVKLTSEDPEIPDVHWRRIAYGSVAPFALLQSRRSSISALLKTPSPYHSDWWENVLQYSKEIGSLLGGSKLPPSPIIDDSKTIVKRDEEPTSLKAAWELIEIFYVDKQSQSWLPERLVDWLADYDSLLTSTHETIHGKLVDFQKELVNIQVIEDDPRYWELLSSALSVGWLDIVVKMLRLHGSYQLDQLSNREESELGVVLQTHHLVFQEREKLPPPRDMEHHIVLKEGVDPINSWCQESVTAERGATVERSTAVSSVSFSLVNGRDCIARIAALAGVLENGLVETVATLISKMPRFHPESVGKLGECYKSKPDFIKSWEKWRSQITKLDCSPFWIQCDNQQTVEGLRNLLQIMLGNTDSLCMATCYWIELYISHFLYIRPFTMGIESMCSLAQKCIQLKPQSNTHRLEGLMVGILEENTEVVLAECSREFGPWLVAHAIELLTAGSEQAEVLLHEQRYNLGGISIVELHRLVYAQILSSHALTWQIAPIYLTSCVKQGMGLLENLLYRQSIQHNNVLLKNIEICRLYELDHISSNIMKHGHKGAGVFWLQQAQDSSCLDRIAQQLFDSVGKSISDESFKQWEGMIELLGSESKPAGGLEFLHKYRDFKKSLQKVSVGKSTEIARQAVGSLMLVLLTLL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02035 697 PANTHER FROUNT PROTEIN-RELATED 20 691 IPR011502 -
Vimu1g02035 697 Pfam Nup85 Nucleoporin 63 252 IPR011502 -
Vimu1g02035 697 Pfam Nup85 Nucleoporin 338 691 IPR011502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02035 Vimu-Chr1 27988742 28003208 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02035 K14304 - pop:7476700 790.801