Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g1351 Acco02g1104 Accr2g02626 Adu06g00874 Aed4g0463 Aev06g1332 Ahy16g0437 Ahy6g0893 . Alju01g1092 Amo16g0251 . Apr4g1235 Arst6g01160 . Bisa03g2391 . Car03g02090 Cca03g01939 Dere01g2418 Dod01g2233 Enph2g0851 Glsi02g2324 Gma19g01301 Gma03g01252 Gso19g1154 Gso3g1154 . . . . . . Lapu1g00191 Lasa3g02753 Lele05g0851 Lele06g0703 Lele07g0890 Lele08g0704 Lja1g1314 Mal3g3500 Mepo3g02840 Mesa25g01335 Mibi02g0994 Mtr7g2625 Phac1g01792 Phco2g01507 Prci1g3308 Psa3g1728 Pste5g00177 . Rops8g02796 Seca2g03981 Spst1g03413 Ssu4g1506 Sto8g1327 Tpr6g1481 Trre13g03343 Tsu07g03335 Vian2g01921 Vifa5g02310 Vimu6g03086 Viun1g01710 Vivi6g04362 Vra3g0291
Pvu1g1352 . . Adu06g00875 Aed4g0462 Aev06g1331 Ahy16g0434 Ahy6g0894 Aip06g00422 . . . Apr4g1234 Arst6g01162 . . Bva04g02163 Car03g02091 Cca03g01940 . Dod01g2234 . . Gma19g01302 Gma03g01253 Gso19g1155 Gso3g1155 . . . . . . . . . . . . Lja1g1313 Mal3g3501 . . . Mtr7g2626 . . . Psa3g1726 . . . . . Ssu4g1505 . Tpr6g1482 . Tsu07g03336 . Vifa5g02312 . . . Vra3g0290
Pvu1g1353 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1354 Acco02g1107 Accr2g02623 Adu06g00876 Aed4g0461 Aev06g1330 Ahy16g0433 Ahy6g0896 Aip06g00421 Alju01g1095 Amo16g0248 . Apr4g1228 Arst6g01164 . Bisa03g2387 Bva04g02166 Car03g02092 Cca03g01941 Dere01g2420 Dod01g2235 Enph2g0854 Glsi02g2329 Gma19g01303 Gma03g01254 Gso19g1156 Gso3g1156 . . . . . . Lapu1g00189 Lasa3g02762 Lele05g0854 Lele06g0704 Lele07g0893 Lele08g0706 Lja1g1312 Mal3g3503 . Mesa25g01333 Mibi02g0997 Mtr7g2627 Phac1g01794 Phco2g01509 Prci1g3305 Psa3g1708 Pste5g00183 . Rops8g02798 Seca2g03992 Spst1g03410 Ssu4g1504 Sto8g1323 Tpr6g1483 Trre13g03347 . Vian2g01925 . Vimu6g03083 Viun1g01713 Vivi6g04369 Vra3g0289
Pvu1g1355 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste5g00195 . . . Spst1g03408 . . . . . . . . . . .
Pvu1g1356 . . Adu06g00877 Aed4g0459 Aev06g1329 Ahy16g0432 Ahy6g0897 Aip06g00420 . Amo16g0246 . Apr4g1227 Arst6g01165 . . . . Cca03g01942 . Dod01g2237 Enph2g0856 . . Gma03g01257 . Gso3g1157 . . Lal20g0266 . . . . . . . . . . Mal3g3504 . . . . . . Prci1g3303 Psa3g1706 . . . . . Ssu4g1502 Sto8g1322 Tpr6g1485 . Tsu07g03337 . . . . . Vra3g0288
Pvu1g1357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra3g0287
Pvu1g1358 . . Adu06g00878 Aed4g0458 Aev06g1328 Ahy16g0431 Ahy6g0899 Aip06g00419 . Amo16g0245 . Apr4g1225 Arst6g01166 . . Bva04g02167 . . . . Enph2g0858 . Gma19g01304 Gma03g01258 Gso19g1157 Gso3g1158 Lal11g1347 . . . Lan5g1000 Lan19g0274 . . . . . . Lja1g1310 Mal3g3506 . . . . . . Prci1g3302 . . . . . . Ssu4g1500 Sto8g1321 Tpr6g1486 . Tsu07g03338 . . Vimu6g03082 . . Vra3g0286
Pvu1g1359 . . Adu06g00880 Aed4g0457 Aev06g1320 Ahy16g0427 Ahy6g0901 . . Amo16g0240 . Apr4g1223 Arst6g01168 Bach8g01158 . Bva04g02171 Car03g02093 Cca03g01943 . Dod01g2238 . . Gma19g01305 Gma03g01261 Gso19g1158 Gso3g1159 . . . . . . Lapu1g00181 . . . . . Lja1g1309 Mal3g3507 Mepo3g02843 Mesa25g01328 . Mtr7g2628 Phac1g01804 Phco2g01515 . Psa3g1703 Pste5g00205 . . . Spst1g03407 Ssu4g1499 . Tpr6g1490 . Tsu07g03339 Vian2g01929 Vifa5g02318 Vimu6g03078 Viun1g01718 Vivi6g04372 Vra3g0285
Pvu1g1360 . . . . . . . . . Amo16g0239 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst1g03406 . . . . . . . Vimu6g03077 . Vivi6g04373 .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g1351 Chr1 36911989 36914461 +
Acco Acco02g1104 Chr02 8007505 8009413 +
Accr Accr2g02626 Chr2 61989650 61991558 -
Adu Adu06g00874 Chr06 10660904 10663265 +
Aed Aed4g0463 Chr4 3490473 3493440 -
Aev Aev06g1332 Chr06 9043105 9045218 -
Ahy Ahy16g0437 Chr16 8259159 8261560 -
Ahy Ahy6g0893 Chr6 11409387 11411836 +
Alju Alju01g1092 Chr01 8367985 8369888 +
Amo Amo16g0251 Chr16 3767342 3769732 -
Apr Apr4g1235 Chr4 11176455 11179116 -
Arst Arst6g01160 Chr6 10691216 10693600 +
Bisa Bisa03g2391 Chr03 35388650 35390522 -
Car Car03g02090 Chr03 67118052 67120871 +
Cca Cca03g01939 Chr03 39223323 39225961 +
Dere Dere01g2418 Chr01 38563121 38577748 +
Dod Dod01g2233 Chr01 59876778 59879735 +
Enph Enph2g0851 Chr2 6838776 6840624 +
Glsi Glsi02g2324 Chr02 73571782 73573815 +
Gma Gma19g01301 Chr19 42244488 42246495 +
Gma Gma03g01252 Chr03 38455594 38457627 +
Gso Gso19g1154 Chr19 39782411 39785092 +
Gso Gso3g1154 Chr3 36931270 36934092 +
Lapu Lapu1g00191 Chr1 8060441 8063303 -
Lasa Lasa3g02753 Chr3 588354300 588355975 +
Lele Lele05g0851 Chr05 5197867 5199719 +
Lele Lele06g0703 Chr06 4300465 4302253 +
Lele Lele07g0890 Chr07 5264402 5266239 +
Lele Lele08g0704 Chr08 4319576 4321390 +
Lja Lja1g1314 Chr1 13749363 13752030 -
Mal Mal3g3500 Chr3 112047227 112049595 +
Mepo Mepo3g02840 Chr3 38464546 38467299 +
Mesa Mesa25g01335 Chr25 16251800 16253077 -
Mibi Mibi02g0994 Chr02 9816781 9818698 +
Mtr Mtr7g2625 Chr7 42901813 42904532 +
Phac Phac1g01792 Chr1 27520092 27522953 +
Phco Phco2g01507 Chr2 44922186 44924196 +
Prci Prci1g3308 Chr1 50647181 50649524 -
Psa Psa3g1728 Chr3 153644033 153646642 -
Pste Pste5g00177 Chr5 1329625 1333025 +
Rops Rops8g02796 Chr8 63029111 63031668 +
Seca Seca2g03981 Chr2 121588854 121590869 +
Spst Spst1g03413 Chr1 42807845 42809865 -
Ssu Ssu4g1506 Chr4 25571238 25573261 -
Sto Sto8g1327 Chr8 8437368 8439610 -
Tpr Tpr6g1481 Chr6 15968410 15971256 +
Trre Trre13g03343 Chr13 41001661 41003825 +
Tsu Tsu07g03335 Chr07 39737450 39740030 +
Vian Vian2g01921 Chr2 38408053 38410073 +
Vifa Vifa5g02310 Chr5 758051806 758053456 +
Vimu Vimu6g03086 Chr6 27204209 27204514 -
Viun Viun1g01710 Chr1 28879036 28881607 +
Vivi Vivi6g04362 Chr6 143944984 143947106 +
Vra Vra3g0291 Chr3 3403446 3406176 -
Pvu Pvu1g1352 Chr1 36916261 36924045 -
Adu Adu06g00875 Chr06 10665958 10671468 -
Aed Aed4g0462 Chr4 3481121 3488337 +
Aev Aev06g1331 Chr06 9032773 9038916 +
Ahy Ahy16g0434 Chr16 8244919 8250799 +
Ahy Ahy6g0894 Chr6 11414266 11420164 -
Aip Aip06g00422 Chr06 4972116 4983387 +
Apr Apr4g1234 Chr4 11167360 11174307 +
Arst Arst6g01162 Chr6 10696074 10701093 -
Bva Bva04g02163 Chr04 20895527 20902942 -
Car Car03g02091 Chr03 67123136 67130731 -
Cca Cca03g01940 Chr03 39228823 39236401 -
Dod Dod01g2234 Chr01 59883444 59890889 -
Gma Gma19g01302 Chr19 42248958 42261301 -
Gma Gma03g01253 Chr03 38460055 38467625 -
Gso Gso19g1155 Chr19 39787074 39799626 -
Gso Gso3g1155 Chr3 36936057 36944056 -
Lja Lja1g1313 Chr1 13737920 13745784 +
Mal Mal3g3501 Chr3 112051809 112058351 -
Mtr Mtr7g2626 Chr7 42907046 42914257 -
Psa Psa3g1726 Chr3 153479860 153487138 +
Ssu Ssu4g1505 Chr4 25540699 25557431 +
Tpr Tpr6g1482 Chr6 15973599 15981256 -
Tsu Tsu07g03336 Chr07 39742261 39749312 -
Vifa Vifa5g02312 Chr5 758470174 758486994 -
Vra Vra3g0290 Chr3 3394050 3401851 +
Pvu Pvu1g1353 Chr1 36944311 36946509 +
Pvu Pvu1g1354 Chr1 36950862 36957066 +
Acco Acco02g1107 Chr02 8023748 8026863 +
Accr Accr2g02623 Chr2 61959267 61962470 -
Adu Adu06g00876 Chr06 10673974 10676672 +
Aed Aed4g0461 Chr4 3474621 3477866 -
Aev Aev06g1330 Chr06 9027827 9032383 -
Ahy Ahy16g0433 Chr16 8237356 8240151 -
Ahy Ahy6g0896 Chr6 11445117 11447888 +
Aip Aip06g00421 Chr06 4967733 4970324 -
Alju Alju01g1095 Chr01 8381039 8384067 +
Amo Amo16g0248 Chr16 3745483 3748298 -
Apr Apr4g1228 Chr4 10990358 10994185 -
Arst Arst6g01164 Chr6 10704314 10707034 +
Bisa Bisa03g2387 Chr03 35315395 35319069 -
Bva Bva04g02166 Chr04 20912605 20912904 +
Car Car03g02092 Chr03 67141262 67145636 +
Cca Cca03g01941 Chr03 39242144 39246445 +
Dere Dere01g2420 Chr01 38602413 38606088 +
Dod Dod01g2235 Chr01 59895988 59899603 +
Enph Enph2g0854 Chr2 6854325 6858687 +
Glsi Glsi02g2329 Chr02 73610717 73616707 +
Gma Gma19g01303 Chr19 42264687 42269573 +
Gma Gma03g01254 Chr03 38471917 38476522 +
Gso Gso19g1156 Chr19 39802619 39807530 +
Gso Gso3g1156 Chr3 36947944 36952442 +
Lapu Lapu1g00189 Chr1 8016326 8021319 -
Lasa Lasa3g02762 Chr3 589241127 589244796 +
Lele Lele05g0854 Chr05 5212781 5215638 +
Lele Lele06g0704 Chr06 4310671 4316930 +
Lele Lele07g0893 Chr07 5289859 5292751 +
Lele Lele08g0706 Chr08 4332258 4335286 +
Lja Lja1g1312 Chr1 13732201 13735326 -
Mal Mal3g3503 Chr3 112068681 112074170 +
Mesa Mesa25g01333 Chr25 16226648 16231624 -
Mibi Mibi02g0997 Chr02 9832301 9834658 +
Mtr Mtr7g2627 Chr7 42924354 42930261 +
Phac Phac1g01794 Chr1 27552304 27558709 +
Phco Phco2g01509 Chr2 44954426 44960128 +
Prci Prci1g3305 Chr1 50628058 50631031 -
Psa Psa3g1708 Chr3 152803387 152808403 -
Pste Pste5g00183 Chr5 1368343 1373685 +
Rops Rops8g02798 Chr8 63049238 63053591 +
Seca Seca2g03992 Chr2 121801442 121805852 +
Spst Spst1g03410 Chr1 42773801 42778597 -
Ssu Ssu4g1504 Chr4 25533120 25538855 -
Sto Sto8g1323 Chr8 8407487 8410898 -
Tpr Tpr6g1483 Chr6 15989962 15997002 +
Trre Trre13g03347 Chr13 41027412 41031354 +
Vian Vian2g01925 Chr2 38507558 38513025 +
Vimu Vimu6g03083 Chr6 27170605 27179073 -
Viun Viun1g01713 Chr1 28901423 28906988 +
Vivi Vivi6g04369 Chr6 144016936 144019534 +
Vra Vra3g0289 Chr3 3377226 3386631 -
Pvu Pvu1g1355 Chr1 36977445 36977753 +
Pste Pste5g00195 Chr5 1478762 1484231 +
Spst Spst1g03408 Chr1 42742204 42748173 -
Pvu Pvu1g1356 Chr1 36984197 36987468 +
Adu Adu06g00877 Chr06 10686350 10690652 +
Aed Aed4g0459 Chr4 3454899 3458691 -
Aev Aev06g1329 Chr06 9007428 9019379 -
Ahy Ahy16g0432 Chr16 8229755 8234338 -
Ahy Ahy6g0897 Chr6 11458263 11462757 +
Aip Aip06g00420 Chr06 4960214 4964691 -
Amo Amo16g0246 Chr16 3730788 3735170 -
Apr Apr4g1227 Chr4 10977366 10987824 -
Arst Arst6g01165 Chr6 10716735 10720751 +
Cca Cca03g01942 Chr03 39250808 39254700 -
Dod Dod01g2237 Chr01 59923836 59928880 +
Enph Enph2g0856 Chr2 6868235 6871509 +
Gma Gma03g01257 Chr03 38516441 38520566 +
Gso Gso3g1157 Chr3 36971421 36978739 +
Lal Lal20g0266 Chr20 1918506 1923866 +
Mal Mal3g3504 Chr3 112083254 112088251 +
Prci Prci1g3303 Chr1 50617311 50622062 -
Psa Psa3g1706 Chr3 152624524 152628018 -
Ssu Ssu4g1502 Chr4 25501900 25512590 +
Sto Sto8g1322 Chr8 8391453 8401191 -
Tpr Tpr6g1485 Chr6 16013385 16020766 +
Tsu Tsu07g03337 Chr07 39753179 39765979 +
Vra Vra3g0288 Chr3 3358946 3364931 -
Pvu Pvu1g1357 Chr1 37016380 37019136 +
Vra Vra3g0287 Chr3 3351172 3353844 -
Pvu Pvu1g1358 Chr1 37058999 37061900 +
Adu Adu06g00878 Chr06 10717750 10722391 +
Aed Aed4g0458 Chr4 3448215 3453253 -
Aev Aev06g1328 Chr06 8997498 9001954 -
Ahy Ahy16g0431 Chr16 8210074 8215899 -
Ahy Ahy6g0899 Chr6 11491972 11496762 +
Aip Aip06g00419 Chr06 4943933 4948890 -
Amo Amo16g0245 Chr16 3711199 3716900 -
Apr Apr4g1225 Chr4 10937762 10944541 -
Arst Arst6g01166 Chr6 10748026 10752823 +
Bva Bva04g02167 Chr04 20917552 20921194 +
Enph Enph2g0858 Chr2 6886698 6890056 +
Gma Gma19g01304 Chr19 42272848 42285660 +
Gma Gma03g01258 Chr03 38526904 38532445 +
Gso Gso19g1157 Chr19 39813764 39818282 +
Gso Gso3g1158 Chr3 37002912 37008064 +
Lal Lal11g1347 Chr11 17030191 17042373 +
Lan Lan5g1000 Chr5 23305042 23310308 -
Lan Lan19g0274 Chr19 2979098 2984534 -
Lja Lja1g1310 Chr1 13704954 13724896 -
Mal Mal3g3506 Chr3 112187804 112196398 +
Prci Prci1g3302 Chr1 50617061 50622059 -
Ssu Ssu4g1500 Chr4 25457877 25460420 -
Sto Sto8g1321 Chr8 8382589 8388949 -
Tpr Tpr6g1486 Chr6 16042719 16052838 +
Tsu Tsu07g03338 Chr07 39783954 39834084 +
Vimu Vimu6g03082 Chr6 27156533 27164800 -
Vra Vra3g0286 Chr3 3334510 3339943 -
Pvu Pvu1g1359 Chr1 37103243 37105710 +
Adu Adu06g00880 Chr06 10776042 10780226 +
Aed Aed4g0457 Chr4 3441067 3442319 -
Aev Aev06g1320 Chr06 8935174 8937328 -
Ahy Ahy16g0427 Chr16 8160371 8163904 -
Ahy Ahy6g0901 Chr6 11553694 11557332 +
Amo Amo16g0240 Chr16 3599862 3603487 -
Apr Apr4g1223 Chr4 10910392 10912698 -
Arst Arst6g01168 Chr6 10807462 10810852 +
Bach Bach8g01158 Chr8 7754007 7756084 -
Bva Bva04g02171 Chr04 20935819 20937620 +
Car Car03g02093 Chr03 67150693 67153102 +
Cca Cca03g01943 Chr03 39265471 39269029 +
Dod Dod01g2238 Chr01 59948327 59952132 +
Gma Gma19g01305 Chr19 42290933 42293767 +
Gma Gma03g01261 Chr03 38542661 38545563 +
Gso Gso19g1158 Chr19 39830594 39833370 +
Gso Gso3g1159 Chr3 37017493 37021001 +
Lapu Lapu1g00181 Chr1 7733980 7736669 -
Lja Lja1g1309 Chr1 13684276 13688186 -
Mal Mal3g3507 Chr3 112202089 112203799 +
Mepo Mepo3g02843 Chr3 38498301 38501039 +
Mesa Mesa25g01328 Chr25 16183243 16184979 -
Mtr Mtr7g2628 Chr7 42941896 42944282 +
Phac Phac1g01804 Chr1 27695993 27698582 +
Phco Phco2g01515 Chr2 45080477 45082846 +
Psa Psa3g1703 Chr3 152505672 152508139 -
Pste Pste5g00205 Chr5 1549809 1556193 +
Spst Spst1g03407 Chr1 42733099 42735148 -
Ssu Ssu4g1499 Chr4 25419972 25423560 -
Tpr Tpr6g1490 Chr6 16078514 16081575 +
Tsu Tsu07g03339 Chr07 39839069 39841464 +
Vian Vian2g01929 Chr2 38571176 38573111 +
Vifa Vifa5g02318 Chr5 760988889 760989986 +
Vimu Vimu6g03078 Chr6 27121120 27122950 -
Viun Viun1g01718 Chr1 28967391 28969486 +
Vivi Vivi6g04372 Chr6 144094079 144095804 +
Vra Vra3g0285 Chr3 3320860 3322973 -
Pvu Pvu1g1360 Chr1 37120977 37126908 -
Amo Amo16g0239 Chr16 3577602 3599689 +
Spst Spst1g03406 Chr1 42717987 42730440 +
Vimu Vimu6g03077 Chr6 27107713 27112036 +
Vivi Vivi6g04373 Chr6 144101927 144134012 -
Arst Arst6g01168 Chr6 10807462 10810852 +