Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1504 atgtcAGGGTTGAAGGGATTGCTGAAGAAAGGGTTAGATTTAGGAGACATGGCGTTCAACGCCGGCGGAGGAGCCATCAACTGGTTCCCGGGCCACATGGCCGCCGCCACACGCGCCATCCGCCACCGCCTCAAACTCTCCGACCTCGTCATCGAAGTCCGAGACGCTCGCATTCCCTTCTCCTCCGCCAACGCCGACCTCCAACCCCACCTCTCTGGGAAACGACGCGTCGTCGCACTCAACAAAAAAGACTTGGCCAACCCTAACATCATGCATaAATGGACGCATTATTTCGAGACGTGCAAGCAAGACTGCGTTCCGATAAACGCGCACAGCAAGAGTTCCGTTAAGAGGCTTGTGGAGCTCGTGGAGTTCAAGCTGAAGGAAGTGATTTCCAGGGAACCTACGCTGCTTGTGATGGTGGTTGGTGTTCCCAACGTTGGCAAGTCTGCTTTGATTAACTCCATTCATCAAATTGCGCAGTCTCGGTTTCCTGTGCCGGAGAAGAAGAAGCGAGCTGCGGTGGGTCCGCTACCTGGTGTTACTCAAGACATTGCAGGATTCAAGATAGCACATAAACCAAGCATTTATGTCCTAGATACCCCAGGGGTTCTGGTCCCAAGTATCTCAGACATAGAGACAGGGTTAAAACTGGCTCTGGCAGGGTCTGTCAAAGATTCAGTAGTGGGTGAGGAGCGTATTGCTCAATACTTATTGGCAGTTTTGAATACCCGGGGGACTCCACTTCACTGGAAACACCTAAATAACAGGAGAATAGATGGGATTGAATATGAAGCTGaggaaaattatgaatataGTCTGAAAAATCTTAAACCAAAGAGAAGAAATCTGCCAAATAGATCTGATTTGGTCTATGTTGAGGATCTTGTAATTGAAGTTCAGCATGCACTCTATTCAACTGTAACAGAATTCAATGGGAATGTAGAAGATGAGGGTGACTTAGAGAGCCTTATTGACCTGCAATTTGGTGCACTACAGAAGGCATTGAAGATACCTCACAAGGCTTCAGAAGCACGGTTAATGGTATCCAAGAAGTTCCTTACTCTATTCAGGACTGGTAAGCTTGGACCTTTCATTCTTGATGATGTCCCGGATGTAAAGCCTGTATCATAA 1134 0.4735 MSGLKGLLKKGLDLGDMAFNAGGGAINWFPGHMAAATRAIRHRLKLSDLVIEVRDARIPFSSANADLQPHLSGKRRVVALNKKDLANPNIMHKWTHYFETCKQDCVPINAHSKSSVKRLVELVEFKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIAQSRFPVPEKKKRAAVGPLPGVTQDIAGFKIAHKPSIYVLDTPGVLVPSISDIETGLKLALAGSVKDSVVGEERIAQYLLAVLNTRGTPLHWKHLNNRRIDGIEYEAEENYEYSLKNLKPKRRNLPNRSDLVYVEDLVIEVQHALYSTVTEFNGNVEDEGDLESLIDLQFGALQKALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDVKPVS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1504 377 Gene3D - 210 284 IPR023179 -
Ssu4g1504 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 219 IPR027417 -
Ssu4g1504 377 Gene3D - 26 205 IPR027417 -
Ssu4g1504 377 Pfam 50S ribosome-binding GTPase 139 249 IPR006073 GO:0005525
Ssu4g1504 377 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 36 207 IPR030378 GO:0005525
Ssu4g1504 377 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 19 373 - -
Ssu4g1504 377 PANTHER SHORT INTEGUMENTS 2, MITOCHONDRIAL-LIKE 19 373 - -
Ssu4g1504 377 CDD YlqF 28 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1504 Ssu-Chr4 25533120 25538855 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1504 K19828 - gmx:100801130 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1504 4 25533120 25538855 Ssu4g1504 4 25533120 25538855 ECH