Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03083 ATGAAGTTTGAACCGAGGGTTGCCGTAAAGGGGAAATCGAACAGGTTGAGTCCAGAGAGGAATAATTGTAGGCTTGGTCTGACCCTCACTGCAACTGCGAAGTTGACTGAAAGAGCAGAGGAGAGAAGAATGTCAGGGTTAAAGGAATTGCTTAAGAAAGGGTTAGGTTTAGGAGACATGGCGTTCAACGCCAGCGAAGGAGCTATCAACTGGTTCCCTGGTCACATGGCCGCCGCCAGACGCGCCATCCGCCAACGTCTCAAACTCTCCGACCTCGTCATCGAAGTCCGAGATGCTCGACTTCCTCTCTCCTCCGCCAACGCCGATCTCCAGCCACACCTCTCCGCAAAACTACGCGTCGTCGCACTCAATAAAAAAGATCTTGCCAACCCTAACATCATGCATAAATGGGCGCATTATTTCGAAACGCGCAAGCAGGATTGCATTGCAATAAACGCTCACAGTCAGAGTTCCGTGAGGAAGCTTCTGGAGCTTGTGGAGTTCAAGCTGAAAGAAGCCATTCGCCGGGAACCGACGCTACTTGTGATGGTGGTCGGTGTTCCCAACGTTGGCAAGTCTGCTTTGATTAACTCCATTCATCAGATTGCAAAGTCTCGCTTTTCTGCGCAGGAGAAGATGAAGCGTGCTGCTGTGGGTCCGTTACCTGGTGTTACTCAAGACATAGCAGGATTTAAGATAGCACATAAACCAAGTATATATGTCCTGGATTCCCCCGGGGTACTGGTTCCGAGTATCTCGGACATAGAGACAGGGTTAAAGCTGGCTCTGGCAGGGTCAGTCAAAGATTCAGTAGTGGGTGAGGAGCGTATTGCTCAATACTTATTGGCAGTTTTGGATACCCGGGGGACTCCACTTCACTGGAAGCACCTAAATAATAGGAGACTGGATGGGATTGAATACGAAGCTGAGGCGAATCATGAATATAGTCTGAAAAATCTTAAGCCAAAGAGAAGAAATCCGCCAAATAGATCTGATTTGGTGTATGTTGAGGATCTTGTAACGGGAGTTCAGCATGCGCTCTATTCAACTCTAACAGAATTCAATGGGAATGTGGAAGACGAGAATGACCTGGAGTGCCTTATTGACCTGCAATTTAGTGCACTCCAAAAGGCAATGAAGATACCTCACAAGGCTTCAGAAGCAAGGTTAATGGTATCCAAGAAGTTACTTACTCTATTCAGGACAGGTAAGCTTGGTCCTTTCATTCTTGATGATGTCCCGGATGTCAATTGA 1254 0.4769 MKFEPRVAVKGKSNRLSPERNNCRLGLTLTATAKLTERAEERRMSGLKELLKKGLGLGDMAFNASEGAINWFPGHMAAARRAIRQRLKLSDLVIEVRDARLPLSSANADLQPHLSAKLRVVALNKKDLANPNIMHKWAHYFETRKQDCIAINAHSQSSVRKLLELVEFKLKEAIRREPTLLVMVVGVPNVGKSALINSIHQIAKSRFSAQEKMKRAAVGPLPGVTQDIAGFKIAHKPSIYVLDSPGVLVPSISDIETGLKLALAGSVKDSVVGEERIAQYLLAVLDTRGTPLHWKHLNNRRLDGIEYEAEANHEYSLKNLKPKRRNPPNRSDLVYVEDLVTGVQHALYSTLTEFNGNVEDENDLECLIDLQFSALQKAMKIPHKASEARLMVSKKLLTLFRTGKLGPFILDDVPDVN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03083 417 Gene3D - 253 313 IPR023179 -
Vimu6g03083 417 Gene3D - 69 248 IPR027417 -
Vimu6g03083 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 263 IPR027417 -
Vimu6g03083 417 FunFam Mitochondrial GTPase 1 69 248 - -
Vimu6g03083 417 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 61 415 - -
Vimu6g03083 417 Pfam 50S ribosome-binding GTPase 182 295 IPR006073 GO:0005525
Vimu6g03083 417 CDD YlqF 71 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03083 Vimu-Chr6 27170605 27179073 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03083 K19828 - gmx:100801130 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03083 6 27170605 27179073 Vimu6g03083 6 27170605 27179073 ECH