Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1353 ATGGAGGTGCAAACGGAGGCGAGCAGAGGTGCGAGCAGAGGCAAACGAAGGCAAACGGAGGTACGAGCGGAGGTGCGAGTGGAGGCGAATGGAGGTGTGAGCGGAGGTTTAAATTTGATGCTTGGATATTTTAAGCAGGTTGGAAAAGTGTACTTTGAGTTGGTTGATTACTTAGAAGTTGATCAGGCCTTTAGCCTTCCTCGCCAGATCATGCCTTATAGTTTGGAAGGAATGGATGTATACTCAACACTCCTTTATTTACCTGGCTCAGGAACTGGATCCACTAATCGTTTAACTCCTCAGTCTTGGTGTGCAATGGGTAATTGCTATAGCCTGCAAAAGGATCATGAAACTGCACTGAAGAATTTTCAGCGAGTTGTTCAACTGAATCCCAGATTTGCTTATGCACACACCCTTTGTGGACACGAGTATGACCAGTGCTTTTGTTTATATTATATCCCCAAGTCTGAGTAA 474 0.4515 MEVQTEASRGASRGKRRQTEVRAEVRVEANGGVSGGLNLMLGYFKQVGKVYFELVDYLEVDQAFSLPRQIMPYSLEGMDVYSTLLYLPGSGTGSTNRLTPQSWCAMGNCYSLQKDHETALKNFQRVVQLNPRFAYAHTLCGHEYDQCFCLYYIPKSE* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1353 157 Pfam Tetratricopeptide repeat 101 133 IPR001440 GO:0005515
Pvu1g1353 157 SUPERFAMILY TPR-like 44 144 IPR011990 GO:0005515
Pvu1g1353 157 ProSiteProfiles TPR repeat profile. 100 133 IPR019734 GO:0005515
Pvu1g1353 157 PANTHER CELL DIVISION CYCLE 16,23,27 45 144 - -
Pvu1g1353 157 PANTHER CELL DIVISION CYCLE PROTEIN 27 HOMOLOG B-LIKE 45 144 - -
Pvu1g1353 157 MobiDBLite consensus disorder prediction 1 22 - -
Pvu1g1353 157 Gene3D Tetratricopeptide repeat domain 37 92 IPR011990 GO:0005515
Pvu1g1353 157 Gene3D Tetratricopeptide repeat domain 97 147 IPR011990 GO:0005515
Pvu1g1353 157 SMART tpr_5 100 133 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1353 Pvu-Chr1 36944311 36946509 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1353 K03350 - pvu:PHAVU_001G130400g 326.25