Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01939 ATGGTCCACTATCACCGTTACCATCAACCCAGGAAGGGTGTCACAGACTCCAACAAAGATGAAGAGTCACAAAACCTTGTGTTGGATTGCTCAACCTCTGCTTACTACAAGAGAACCAGGCCAAAGTTGTTGTCTTTTCTCTTCCTCATCACCCTCCTCTCCTGCTGCTATGTCTTTGCACCTCTTTTCCTTTGCCCTTCTTTCCCTTTTTCTCTCTTATGTAACTCTCCCGGAACTGAAAATGATGTGAGCCGAGATGGTGTTGATGTATATGCTTCTTCTACATGCTCTTCAGTTTCTGCTGGAACTATATGTTGTGATAGAAGTAGTTATCGTTCTGATATTTGTGTGATGAAAGGTGATATCAGAACACACTCTGCTTCCACTTCGGTCTTTCTCTTCAATTCAAGGAGCCCCGATAATGGTTCCACGAATGCTGAAGAGGAACTCCAACATGAAAAGATCAAGCCATATACTAGAAAATGGGAGAAGAGTGTTATGAACAACATTGATGAATTAAACCTTGTTTCGAAGAAAGTGAATTTGGTTAGTGTTGGTGGTTGTGATGTGCAACATGATGTTCCAGCGGTGTTTTTTTCTACTGGGGGCTACACGGGCAATGTTTATCATGAATTCAATGATGGAATCATACCTTTGTACATTACTTCACAGCATTTCAACAAGAAAGTTGTGTTTGTGATTCTTGAGTTGCATAATTGGTGGGTGACGAAGTATGAGGACGTCCTTTCTCGTCTATCAGATTTTCCAGTGATTGATTTTACAAAAGACAATAGGACTCATTGCTTCCCAGAAGCCATTGTTGGTCTCACAATCCATGATGAGTTAACTGTTAATTCTGCATTGATGAGGGGCAACAAGAGCATTGTTGATTTTAGAAACCTTTTGGATCAAGCTTATTGGCCTAGGATTAAGGGGCTGATTCATGATGAGGAAAGGGAAGCGCAAGAGAAATTGATAGAACAAACCTCTTCATCTCCATCATCAGAAACATCACAACAACATTACATTAAGCAACAAGTGCCAGAAAATCCAATGAAGAAGCCTAAGTTGGTTATTCTCTCTAGAAGTGGGTCAAGATCTATAACCAATGAGAATTTGCTGGTGAAGATGGCAAAGGAAATTGGCTTTTTGGTGCAAGTTTTGAAGCCTGACAGAACAACAGAATTGGCAATGATATATAGGACTCTTAATGCAAGTGATGTCATGATTGGGGTCCATGGAGCAGCAATGACACATTTTCTGTTCTTGAGACCTGGCTCTGTGTTTATTCAAGTGGATCCTCTTGGTACTAGTTGGGCTGCAGAAACTTATTATGGGGAACCTGCAAGGAAGCTTGGTTTGAAATACATTGGCTATGAAATTCATCCTAGAGAGAGCTCTTTGTATGTGAAATATGATAAAAATGATCCTATTCTTAGAGACCCTACAAGCATTACCAAGAAGGGGTGGGAATATACAAAGAAAATATATCTTGATAGCCAAAAAGTTACATTGGACCTTGGAAGATTCAGAAAAAGGTTGCTTAGAGCTTATGAGTATGCACTCTCCAAATCAAAACTGAATCTCCAAAACCCACCGATTTGA 1605 0.4012 MVHYHRYHQPRKGVTDSNKDEESQNLVLDCSTSAYYKRTRPKLLSFLFLITLLSCCYVFAPLFLCPSFPFSLLCNSPGTENDVSRDGVDVYASSTCSSVSAGTICCDRSSYRSDICVMKGDIRTHSASTSVFLFNSRSPDNGSTNAEEELQHEKIKPYTRKWEKSVMNNIDELNLVSKKVNLVSVGGCDVQHDVPAVFFSTGGYTGNVYHEFNDGIIPLYITSQHFNKKVVFVILELHNWWVTKYEDVLSRLSDFPVIDFTKDNRTHCFPEAIVGLTIHDELTVNSALMRGNKSIVDFRNLLDQAYWPRIKGLIHDEEREAQEKLIEQTSSSPSSETSQQHYIKQQVPENPMKKPKLVILSRSGSRSITNENLLVKMAKEIGFLVQVLKPDRTTELAMIYRTLNASDVMIGVHGAAMTHFLFLRPGSVFIQVDPLGTSWAAETYYGEPARKLGLKYIGYEIHPRESSLYVKYDKNDPILRDPTSITKKGWEYTKKIYLDSQKVTLDLGRFRKRLLRAYEYALSKSKLNLQNPPI 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01939 534 PANTHER EGF DOMAIN-SPECIFIC O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE-LIKE 35 525 - -
Cca03g01939 534 MobiDBLite consensus disorder prediction 321 341 - -
Cca03g01939 534 PANTHER GLYCOSYLTRANSFERASE 35 525 IPR007657 GO:0016757
Cca03g01939 534 MobiDBLite consensus disorder prediction 326 341 - -
Cca03g01939 534 Pfam Glycosyltransferase 61 338 429 IPR007657 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01939 Cca-Chr3 39223323 39225961 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01939 - - gmx:100800591 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01939 03 39223323 39225961 Cca03g01939 03 39223323 39225961 ECH