Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0248 ATGGCGGGATTGAAAAGTCTGCTGAAGAAAGGGTTAGGGTTAGGAGACATGGGATTCAACGCCGGCGGAGGAGCCATTAACTGGTTCCCTGGACACATGGCTGCCGCCACACGCGCCATACGCCACCGCCTCAAACTCTCCGACCTCGTCATCGAAGTCCGCGACGCCCGCATCCCTCTCTCCTCCGCCAACTCCGACCTCCAGCCTCACCTCTCCGGCAAACGCCGCGTCGTCGCTCTCAACAAGAAAGACCTCGCCAACCCTAACATCATGCACAAATGGGTGGATTATTTTGCGAGGTGCAAGCAGGATTGTATTCCGATAAATGCGCATAGCAAGAGTTCAGTGAAGAAGCTTCTGGAGCTTGCGGAGTTGAAGCTGAAGGAAGTGATTTCGAGGGAACCTACTCTGCTGGTTATGGTGGTTGGTGTTCCTAATGTTGGAAAATCTGCGTTGATTAACTCCATTCATCAAATTGCGCAGTCTCGCTTTCCTGTGCAGGAGAAGATGAAGCGAGCTGCTGTAGGTCCACTACCTGGTGTTACCCAAGATATTGCTGGATTTAAGATAGCACAAAAACCCAGCATATATGTCCTAGATACCCCAGGGGTGCTTGTTCCAAGTATCTCAGACATAGAGACAGGGTTAAGGCTGGCTCTTGCAGGTTCTGTGAAAGATTCAGTGGTGGGTGAGGAGCGTATCGCACAATACTTACTGGCAGTTTTGGATACCCGGGGGACTCCACTTCACTGGAAACACCTAAATAATAGGAGAATAGATGGTATTGAATATGATGCTGAAGAAAAACCTGACTATAGTCTGAAAAATCTAAAGCCAAAGACAAGAAATCTACCAAATAAATCTCACTTGATTTATGTTGAGGACCTTGTAATGGAAGTTCAGCGTGCACTGTATTCAACGCTAACAGAATTCGACGGCAATGTAGAAGATGAGAATGACTTAGAGGGCCTCATTGACCTGCAGTTTGGAGCACTGCAGAAAGCAATGAAAATTCCTCACAAGGCATCAGAAGCAAGGTTGATGGTATCCAAGAAGTTTCTCACTTTATTTAGAGCTGGTAAACTTGGACCTTTCATTCTTGATGATGTTCCTGTATCATGA 1122 0.4724 MAGLKSLLKKGLGLGDMGFNAGGGAINWFPGHMAAATRAIRHRLKLSDLVIEVRDARIPLSSANSDLQPHLSGKRRVVALNKKDLANPNIMHKWVDYFARCKQDCIPINAHSKSSVKKLLELAELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIAQSRFPVQEKMKRAAVGPLPGVTQDIAGFKIAQKPSIYVLDTPGVLVPSISDIETGLRLALAGSVKDSVVGEERIAQYLLAVLDTRGTPLHWKHLNNRRIDGIEYDAEEKPDYSLKNLKPKTRNLPNKSHLIYVEDLVMEVQRALYSTLTEFDGNVEDENDLEGLIDLQFGALQKAMKIPHKASEARLMVSKKFLTLFRAGKLGPFILDDVPVS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0248 373 Pfam 50S ribosome-binding GTPase 139 252 IPR006073 GO:0005525
Amo16g0248 373 Gene3D - 26 205 IPR027417 -
Amo16g0248 373 Gene3D - 210 277 IPR023179 -
Amo16g0248 373 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 36 207 IPR030378 GO:0005525
Amo16g0248 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 218 IPR027417 -
Amo16g0248 373 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 17 372 - -
Amo16g0248 373 CDD YlqF 28 205 - -
Amo16g0248 373 PANTHER SHORT INTEGUMENTS 2, MITOCHONDRIAL-LIKE 17 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0248 Amo-Chr16 3745483 3748298 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0248 K19828 - gmx:100785615 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0248 16 3745483 3748298 Amo16g0248 16 3745483 3748298 ECH