Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1312 ATGACAGCAGGAGGGTTAAAGAGCTTACTGAAGAAAGGCTTAGGAGATATGGCCTTCAACACCGGCGGAGGCGCCATCAACTGGTTCCCCGGCCACATGGCCGCCGCCACCCGCGCCATCCTCAGCCGTCTCAAACTCTCCGACCTCGTCATCGAAGTCCGAGACGCTCGCATCCCCCTTTCCTCCGCCAACGCCAACCTCCAACCCCACCTCTCCTCCAAACGCCGCGTCATCGCCCTCAACAAAAAAGACCTCGCAAACCCTAACATCATGCATAAATGGACGAGCTATTTCGATTCGTGCAAGCAAGTTTGCTTTCCGATCAATGCACATAGCAGGAGTTCTGTGATGAAGCTTCTGGAGCTTGTGGAGTTCAAGCTCAAGGAGGTGATTTCGAAGGAGCCTACACTTCTTGTTATGGTGGTTGGTGTTCCTAATGTTGGGAAATCTTGTTTGATTAATAACATTCATCAAATTGCGAAATCGCGGTTTCCCGTGCAGGGGAAGTCGAATAAGCGAGCTACTGTGGGTCCTCTACCTGGTGTTACTCAAGATATTGCAGGATTCAAGATTGCACATAAACCCAGCATATATGTCCTAGATACCCCAGGGGTTTTGGTTCCAAGTATCTCGGACATAGAGACAGGGTTAAAGCTGGCTCTTGCAGGGTCTGTGAAAGATTCAGTGGTGGGTGAGGAGCGTATTGCTCAATACTTACTGGCAGTTCTGAATACTCGGGGAACTCCACTGCACTGGAAGCACCTAAATAACAGGAGAATGGATGGGATTGAATATGAAGTTGAGGAAAATCATGAATATAGTCTGAAAAATCTTAAGCGAAAGAGAAAAAACCTTCCTAATAGATCCGACTTGGTATATGTGGAGGATATTGTAACGGAAGTTCAGCGTGCACTCTATTCGACTCTAACAGAATTCGATGGCAATGTAGAAGATGAGAACGACTTAGAGTGCCTTATTGACCAGCAGTTTGGTGCCCTGCAGAAGGCACTAAAGATAAACCAGAAGGCTTCAGAAGCACGGTTAATGGTATCAAAGAAGTTTCTTACTCTATTCAGGAATGGTAAACTAGGACCTTTCATTCTTGATGATGTCCCTGATGTCATTCCTGTATCATGA 1137 0.4688 MTAGGLKSLLKKGLGDMAFNTGGGAINWFPGHMAAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKRRVIALNKKDLANPNIMHKWTSYFDSCKQVCFPINAHSRSSVMKLLELVEFKLKEVISKEPTLLVMVVGVPNVGKSCLINNIHQIAKSRFPVQGKSNKRATVGPLPGVTQDIAGFKIAHKPSIYVLDTPGVLVPSISDIETGLKLALAGSVKDSVVGEERIAQYLLAVLNTRGTPLHWKHLNNRRMDGIEYEVEENHEYSLKNLKRKRKNLPNRSDLVYVEDIVTEVQRALYSTLTEFDGNVEDENDLECLIDQQFGALQKALKINQKASEARLMVSKKFLTLFRNGKLGPFILDDVPDVIPVS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1312 378 PANTHER SHORT INTEGUMENTS 2, MITOCHONDRIAL-LIKE 19 374 - -
Lja1g1312 378 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 19 374 - -
Lja1g1312 378 Pfam 50S ribosome-binding GTPase 139 257 IPR006073 GO:0005525
Lja1g1312 378 CDD YlqF 28 206 - -
Lja1g1312 378 Gene3D - 26 206 IPR027417 -
Lja1g1312 378 Gene3D - 211 362 IPR023179 -
Lja1g1312 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 220 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1312 Lja-Chr1 13732201 13735326 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1312 K19828 - gmx:100801130 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1312 1 13732201 13735326 Lja1g1312 1 13732201 13735326 ECH