Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1502 ATGGTGATGGTGTGGGAAGATCTGACAGTTGAGCTCCCTGGCAGTTTTGGAGCACACAACAAGAAGTTGCTTAGTGGAATCACGGGTTTTGCTGAACCTGCTAGGATTATGGCTGTCATGGGTCCTTCTGGCTGCGGCAAAACCACCTTCCTTGACTCTTTCActgGAAAACTTCCTGCAAATGTTGTAGTGACCGGGAACATTCTAATCAATGGGAAGAAAACAAGCTTGTATTCCAGAGAAGTGCCaacatcatcaaattcaacattgGGAATGAGAACATCAGAGATCAGAAGAACACTCATTGAGAGTTACAAAAGTTCAAAGTTAATGATcaatgcaagaagaagaattcaaCAACTGAAACCCAATGAAGAGCAAGAAATTAAGCCCAACATAGGTGGCAGTACCACATGGTCGAAGCAATTGTGTACATTGACCAAGCGATCTTTCCTAAACATGACTAGGGACATTGGTTACTACTGGCTGAGGATAATATTCTACACGCTGGTAGGAATCAGTATTGGCACCCTCTTTTTTCATATTGGCACAGGCAACAACTCAATCTTGGCTAGGGGAAAGTGTGTATCATTCATCTATGGGTTCATGATTTGTTTGTCATGTGGAGGATTACCGTTTTTCATTGAAGAATTGAAGGTGTTTTATGTTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGCATTTGTAGtatcaaacataatatcatCATTCCCTTTCCTTGTTCTACTATCGCTTTCCTCCGGAATAATCATCTACTTCATGGTGCAGTTTCATCCGGGTTTATCTAATTGTGCATTTTTCTGCATCAACTTATTCTGCTGCCTATCTGTTGCTGAGTGTTGCATCATGGTTGTAGCCTCAGTGGTCCCCAATGTGCTGATGGGCATAGGAACAGGAGTTGGTGTAATTATCTTCATGATGATGCCCTCCCAAATATTCAGATCATTACCTGACATTCCAAAGTTCTTTTGGCGCTATCCCATGTCCTACCTTAGTTTTGCTGCTTGGGCAGCGCAGGGACAATACAAGAATGACATGCTGGGGGTTGAATTTGATCCTTTGGTGCCCGGAGATCCCAAGGTTAGTGGAGAAAAAGTCCTAGCATTGGTATTTGGGGTTCCATTGGATCATGGCAAATGGTGGGACTTAACAGCATTGGTTACCTTACTATTAGTTCACAGAGTGGTTCTTTACTTGGTGCTTCGGTTTGTCAAAAGAGCTAAATCACCTAAGCTGTGGCTTTATGCCCAGAAAAGTCTACACTTTGCAGAAAGATGTCTACTCAATAACAAGCCATCTATCTTTTCCTGGAAACAAGCTCAGCATCCGTTATCGTCTAAAGAAGGTGTGATGTCCCCAAACCTTGCAATATAA 1395 0.4108 MVMVWEDLTVELPGSFGAHNKKLLSGITGFAEPARIMAVMGPSGCGKTTFLDSFTGKLPANVVVTGNILINGKKTSLYSREVPTSSNSTLGMRTSEIRRTLIESYKSSKLMINARRRIQQLKPNEEQEIKPNIGGSTTWSKQLCTLTKRSFLNMTRDIGYYWLRIIFYTLVGISIGTLFFHIGTGNNSILARGKCVSFIYGFMICLSCGGLPFFIEELKVFYVERSKGHYGEAAFVVSNIISSFPFLVLLSLSSGIIIYFMVQFHPGLSNCAFFCINLFCCLSVAECCIMVVASVVPNVLMGIGTGVGVIIFMMMPSQIFRSLPDIPKFFWRYPMSYLSFAAWAAQGQYKNDMLGVEFDPLVPGDPKVSGEKVLALVFGVPLDHGKWWDLTALVTLLLVHRVVLYLVLRFVKRAKSPKLWLYAQKSLHFAERCLLNNKPSIFSWKQAQHPLSSKEGVMSPNLAI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1502 464 Pfam ABC transporter 32 115 IPR003439 GO:0005524
Ssu4g1502 464 Gene3D - 2 128 IPR027417 -
Ssu4g1502 464 Pfam ABC-2 type transporter 142 347 IPR013525 GO:0016020|GO:0140359
Ssu4g1502 464 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 84 434 - -
Ssu4g1502 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 85 IPR027417 -
Ssu4g1502 464 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 84 434 - -
Ssu4g1502 464 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 82 - -
Ssu4g1502 464 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1502 Ssu-Chr4 25501900 25512590 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1502 - K05681 gmx:100802207 667.151