Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01941 ATGAGAGGGTTGAAGGGATTGGTGAAGAAAGGGTTAGGTCTGGGAGACATGGCGTTCAACGCCGGCGGAGGAGCCATCAACTGGTTCCCCGGCCACATGgccgccgccgcacgcgccatccgccaccgccTCAAGCTCTCCGACCTCGTCATCGAAGTCCGCGACGCTCGCATTCCCCTCTCCTCCGCCAACCCCGATCTCCAGCCGCATCTCTCCGCCAAACGACGCGTCGTCGCGCTCAACAAGAAAGACCTTGCCAACCCTAACATCATGCATAAATGGACGCATTATTTCGAGACGTGCAAGCAAGATTGTATTCCGATAAACGCGCACAGCAAGAGTTCCGTGAAGAAGCTTCTGGAGCTGGTGGAGTTCAAGCTGAAGGAAGTCATTAGCAGGGAACCTACTTTGCTTGTCATGGTGGTTGGTGTTCCCAACGTTGGCAAGTCTGCGTTGATTAACTCCATTCATCAAATTGCGCAGTCTAGGTTTCCTGTGCAGGAGAAGAAGAAGCGTGCTACTGTGGGCCCGTTACCTGGTGTTACGCAAGACATTGCAGGATTCAAGATAGCACATAAACCAAGCATATATGTCCTAGATACCCCAGGGGTTCTGGTTCCAAGTATCTCAGACATAGAGACAGGGTTAAAACTGGCACTGGCAGGATCTGTGAAAGATTCAGTAGTGGGTGAGGAGCGTATTGCTCAATACTTATTGGCAGTTTTGGATACCCGGGGGACTCCGCTTCATTGGAAGTACCTAAATAATAGAAGAATAGACGGGATTGAATATGAAGCTGAGGAAAATCACGAATATAGTCTGAAAAATCTTAAGCCAAAGAGAAGAAATCCGCCAAACAGATCTGATTTGGTCTATGTTGAGGATCTTGTAATGGAAGTTCAACGTGCACTCTACTCAACTCTAACAGAATTCAATGGGAACGTAGAAGATGAAAGTGACTTAGAAAACCTTATTGACCTGCAATTTAGTGCACTACAGAAGGCATTGAAGATACCTCACAAGGCTTCAGAAGCACGGTTAATGGTATCCAAAAAGTTCCTTACTCTATTCAGGACTGGTAAGCTTGGACCTTTCATTCTTGATGACGTCCCGGATATCCAGCCCGTATCATAA 1134 0.4586 MRGLKGLVKKGLGLGDMAFNAGGGAINWFPGHMAAAARAIRHRLKLSDLVIEVRDARIPLSSANPDLQPHLSAKRRVVALNKKDLANPNIMHKWTHYFETCKQDCIPINAHSKSSVKKLLELVEFKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIAQSRFPVQEKKKRATVGPLPGVTQDIAGFKIAHKPSIYVLDTPGVLVPSISDIETGLKLALAGSVKDSVVGEERIAQYLLAVLDTRGTPLHWKYLNNRRIDGIEYEAEENHEYSLKNLKPKRRNPPNRSDLVYVEDLVMEVQRALYSTLTEFNGNVEDESDLENLIDLQFSALQKALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDIQPVS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01941 377 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 36 207 IPR030378 GO:0005525
Cca03g01941 377 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 19 373 - -
Cca03g01941 377 PANTHER SHORT INTEGUMENTS 2, MITOCHONDRIAL-LIKE 19 373 - -
Cca03g01941 377 Gene3D - 26 205 IPR027417 -
Cca03g01941 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 220 IPR027417 -
Cca03g01941 377 Pfam 50S ribosome-binding GTPase 139 256 IPR006073 GO:0005525
Cca03g01941 377 Gene3D - 210 281 IPR023179 -
Cca03g01941 377 CDD YlqF 28 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01941 Cca-Chr3 39242144 39246445 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01941 K19828 - gmx:100801130 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01941 03 39242144 39246445 Cca03g01941 03 39242144 39246445 ECH