Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3571 ATGCCCGCAACGGACTACCAAGGTTCGTCTCCGTCATCATTGTCCCATTTCGGCCGTTCATTTCTGAACATACACCGTGATCATCAGGTTCACTCCATGGAAGGTTCAAGCTTGGAGGTGGAGCTGGAATCGTTTCAGCAACACGTGACTGACCAGTTCCTTGAGCTGTCGTCGGTTAGCCATGAAGAATTGGTGTCACTTTCATGGGTTGGGAAGCTCCTTGATTCGTTCCTGTGCTGCCAAGAGGAGTTCAGGGCCATCCTCCACACCCACAAGGTGCTTGTTTTAAGGCCACCCTCGGATCGCATGGTGTCTGAGTACTTTGAGCGAAGTGTGAAGGCCTTGGATGTTTGCAATGCAATCCGTGATGGGATTGAGCAGATTCGCCAATGGCAGAAGCTCTTGGAGATTGTTCGTTGTGCAATGGGAGGGAACCAGAGGAGCATTGGTGAGGGCCAATTTCGAAGAGCAAAGAAGGCTCTTATTGATTTGGCAATTGGTATGCTTGATGATAAGGATTCTTCTAATGCCTCCATTAATGCACATAGGAATAGGTCATTTGGCCGCAACACTGGTGGTGGTAGAGACCACCATCATAATAACAATCTTCACAATCGATCGTTGGGGCATTTTCGATCCCTTTCGTGGAGTGTTTCTCGAACTTGGTCTGCTGCTAGGCAGCTCCAAGCAATTGGGAACAATATGCATCCGCCTAAGGCTAATGAGCTTGTGGCTTCCGGAGGCCTTGCAATGCCGGTTTTCATCATGAATTCGGTGCTTTTGTTCGTCATGTGGTGTCTTGTGGCTGCAATTCCCTGCCAGGATCGCGGCCTTCAAGTCCATTTCAACATTCCTAGGAACTTCTTGTGGGCTGCTCCAATGCTATCGCTCCACGACAGGATCATGGAGGAGTCCAAGAAGAGGGACCGGAAGAATGCGTGTGGATTGCTCAGGGAGATTCATCAGATTGAGAAATGTGCTAGAGTGATGAATGAGTTGGCTGATTCAGTTCAGTTCCCATTGACAGAGGAAAAGGAAGCTGATGTTAGGCACAGAGCTCAAGAGGTTGCACAACTTTGTGATGCTTTGAAAGATGGGCTAGACCCTTTGGAGCGCCAAGTTAGGGAAGTGTTCCATAGAATTGTGAGAAGCAGAACAGAAGGGCTTGATTCTCTTGGAAAGCAAAACCTTGCTGATTAA 1200 0.485 MPATDYQGSSPSSLSHFGRSFLNIHRDHQVHSMEGSSLEVELESFQQHVTDQFLELSSVSHEELVSLSWVGKLLDSFLCCQEEFRAILHTHKVLVLRPPSDRMVSEYFERSVKALDVCNAIRDGIEQIRQWQKLLEIVRCAMGGNQRSIGEGQFRRAKKALIDLAIGMLDDKDSSNASINAHRNRSFGRNTGGGRDHHHNNNLHNRSLGHFRSLSWSVSRTWSAARQLQAIGNNMHPPKANELVASGGLAMPVFIMNSVLLFVMWCLVAAIPCQDRGLQVHFNIPRNFLWAAPMLSLHDRIMEESKKRDRKNACGLLREIHQIEKCARVMNELADSVQFPLTEEKEADVRHRAQEVAQLCDALKDGLDPLERQVREVFHRIVRSRTEGLDSLGKQNLAD* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3571 399 PANTHER OS04G0688000 PROTEIN 1 396 - -
Amo19g3571 399 PANTHER BPS1-LIKE PROTEIN 1 396 - -
Amo19g3571 399 Pfam Protein ROH1-like 15 392 IPR008511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3571 Amo-Chr19 150271577 150273790 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3571 - - ccaj:109812538 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3571 19 150271577 150273790 Amo19g3571 19 150271577 150273790 ECH
Amo19g3571 19 150271577 150273790 Amo09g2766 09 106707222 106708392 hybridization
Amo19g3527 19 149298770 149300852 Amo19g3571 19 150271577 150273790 PCT
Amo19g3571 19 150271577 150273790 Amo19g3527 19 149298770 149300852 PCT