Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1559 ATGGAGATTGAATTGGGACTCAGGGTTTCCAGACCCAGTCATGATGCCATCTCCGCCAGCCTTCGCATCACCAAAGATGGCCCCAATCCTCTTTTCCTGTATATGGAAACTGACGAGATGTTCATCCTCACTGCCAATCTCAAAGGATATCCGAGGGAGAAACTCAAGATTAGTATAGACGAAGTTGGGACTCAGATTGCTATTAGTGGGGAGAAGGTGATTACACAGATGATGACGGTGGGGTGGATAGCGCACAAGAGAGAGGTTGAGGTCAGGAGATTCAGAAAGGTTTTTCGGATTCCAGACGGGGTTGTTCTAGATGGAATCAACGCCAGTTTCAATGAAGAAGAATCGGTTTTGAAGATTTTAATGCCTAAATCGGTGAAAGGAATTAGTGGGGTTAAGATGGAGGAAGTGAAGGAAGAGGACATTGATGGAAGGAGCTATGAAAGGACTCGAGTTGTGGCTGATGAGGTTCCTGAAACAGAGAATCCTAGAGAGACTCTGAAAGAAGAGATAAACAATGTAACGGCAACTGATGAGGTTGAGGGAAGATTGTCCCAAGCTGCTGATACAGAGGAAGAGCCCACTCAGTTGAATGAAGGAGAGGTGCCATCATCCCAAGAAACTCCAGCCAAAGCCAGAAAGGATTCTGATTCAGAAGCAAAAAGTAGAGCAGCGGAGGAGAAATCAAAGGAGTGTGAACAGAGTCCAGAGGCAACTGAATCAACAAAAGTTGAACAAGATCAAGTGACTGAAGGAGCTCAGGTTGAAGAATATAATGCCCATGAGGAAAATGGTGGAGTTGAAACTCATCCATCACAACAACAGCCGAATGCAGAAATTCAAGAAGCGGCCCAGGATCAAACAGAGTCACTGAAGTCAGATCATCCTGAAGAAGTTGAAGGAATGGGAAATGAAATTCCAGCAGAAACTGATCGAGTAGACCCTCCTGAAGAAAAAGTTGACGACAGACAGGGCTCGTTGGCTCCTTCCAAAAAGTCTAAGCTATGTAGTCCATGTTTCTTTGCAGGATCTGCCATTGTTGTATCAATTATGGTGCTTGTTATTTGCTTAAATCGACCTAAAAGAAGATGA 1098 0.4454 MEIELGLRVSRPSHDAISASLRITKDGPNPLFLYMETDEMFILTANLKGYPREKLKISIDEVGTQIAISGEKVITQMMTVGWIAHKREVEVRRFRKVFRIPDGVVLDGINASFNEEESVLKILMPKSVKGISGVKMEEVKEEDIDGRSYERTRVVADEVPETENPRETLKEEINNVTATDEVEGRLSQAADTEEEPTQLNEGEVPSSQETPAKARKDSDSEAKSRAAEEKSKECEQSPEATESTKVEQDQVTEGAQVEEYNAHEENGGVETHPSQQQPNAEIQEAAQDQTESLKSDHPEEVEGMGNEIPAETDRVDPPEEKVDDRQGSLAPSKKSKLCSPCFFAGSAIVVSIMVLVICLNRPKRR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1559 365 MobiDBLite consensus disorder prediction 268 289 - -
Vvi18g1559 365 MobiDBLite consensus disorder prediction 210 242 - -
Vvi18g1559 365 PANTHER HEAT SHOCK PROTEIN 26 40 357 - -
Vvi18g1559 365 CDD ACD_sHsps-like 36 126 - -
Vvi18g1559 365 MobiDBLite consensus disorder prediction 157 335 - -
Vvi18g1559 365 MobiDBLite consensus disorder prediction 290 330 - -
Vvi18g1559 365 Gene3D - 8 136 IPR008978 -
Vvi18g1559 365 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 22 142 IPR002068 -
Vvi18g1559 365 MobiDBLite consensus disorder prediction 191 207 - -
Vvi18g1559 365 SUPERFAMILY HSP20-like chaperones 29 128 IPR008978 -
Vvi18g1559 365 Pfam Hsp20/alpha crystallin family 35 130 IPR002068 -
Vvi18g1559 365 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1559 Vvi-Chr18 19691814 19692987 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1559 - - vvi:104882680 704.131