Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1566 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1567 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1569 . . . . Adu05g03496 . . . Aev09g2132 . Ahy19g2811 . Aip09g03275 . . . . . . Apr6g1294 Arst5g04488 . Bach1g00020 . Bisa01g0870 . . . Car04g01121 . . . . . Dod06g0890 . . . Glsi01g1336 . Gma10g02147 Gma20g01567 Gma16g01492 . Gso10g2012 Gso10g2012 Gso10g2012 . . Lal12g0088 . . . . . . . . . . Lapu4g00849 . . . . . . . . . . . Lja5g0721 Lja2g2760 Mal1g2160 . . . . . . . Mtr1g3650 . . . . . . . Psa6g4398 . Pste9g01016 . . . . . Pumo6g02391 . Pvu4g1013 . . . Seca10g03635 . Spst4g03372 . . . Sto10g2135 . Tpr1g0851 . . . Tsu01g04301 . Vian8g00886 . . . Vimu8g02615 . Viun4g01843 . . . . .
Vvi18g1570 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1572 . . . . Adu05g03494 . . . . . . . . . Alju02g3742 . . . . Apr6g1293 . . Bach1g00021 . Bisa01g0868 . . . . . . . Dere06g1250 . . . Enph12g0834 . Glsi01g1338 . . . Gma16g01493 . . . . . . . . Lal1g0855 Lal2g0983 . . . . . . . . . . . . . . . . . . . . Lja2g2758 . . . . . . . . . . . . . . Prci14g2273 . . . Pste9g01017 . . . . . Pumo6g02393 . Pvu4g1014 . . . . . Spst4g03371 . . . Sto10g2141 . . . . . . . . . Vifa1g04728 . Vimu8g02614 . . . . . . .
Vvi18g1573 Acco01g0164 . . . Adu05g03492 . . . Aev09g2134 . Ahy19g2813 . Aip09g03279 . . . Amo19g3579 . . Apr6g1292 Arst5g04484 . Bach1g00023 . Bisa01g0864 . . . Car04g01123 . . . Dere06g1248 . Dod06g0887 . Enph12g0832 . Glsi01g1340 . Gma10g02148 Gma20g01566 Gma16g01495 . Gso10g2013 Gso10g2013 Gso10g2013 . . Lal12g0087 Lal24g0073 . Lal2g0982 Lal9g0869 . . . . . . . . Lasa1g02739 . Lele45g0109 Lele46g0134 Lele47g1197 . . . . . Lja5g0718 . Mal1g2157 . Mepo5g04082 . Mesa22g01512 . . . Mtr1g3652 . . . . . . . Psa6g4399 . Pste9g01020 . . Pte9g00433 . . Pumo6g02397 . Pvu4g1017 . Rops5g01082 . Seca10g03641 . Spst4g03364 . . . Sto10g2157 . Tpr1g0849 . Trre11g01000 . Tsu01g04303 . Vian8g00888 . . . Vimu8g02608 . Viun4g01849 . Vivi2g05222 . . .
Vvi18g1574 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1575 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vifa Vifa1g04728 Chr1 740220181 740229363 +
Vvi Vvi18g1566 Chr18 19797966 19801580 -
Vvi Vvi18g1567 Chr18 19823981 19826042 +
Vvi Vvi18g1568 Chr18 19857787 19861733 +
Vvi Vvi18g1569 Chr18 19867618 19871772 -
Adu Adu05g03496 Chr05 107535588 107537921 +
Aev Aev09g2132 Chr09 24335998 24337865 -
Ahy Ahy19g2811 Chr19 150028475 150032172 -
Aip Aip09g03275 Chr09 138775798 138778695 -
Apr Apr6g1294 Chr6 18150933 18155334 +
Arst Arst5g04488 Chr5 106212677 106216654 +
Bach Bach1g00020 Chr1 206335 210492 -
Bisa Bisa01g0870 Chr01 14392399 14396139 +
Car Car04g01121 Chr04 11328532 11332056 -
Dod Dod06g0890 Chr06 11350103 11353909 +
Glsi Glsi01g1336 Chr01 67893913 67898005 -
Gma Gma10g02147 Chr10 48961840 48965916 -
Gma Gma20g01567 Chr20 42750406 42754759 +
Gma Gma16g01492 Chr16 34271529 34277717 -
Gso Gso10g2012 Chr10 47085454 47089518 -
Gso Gso10g2012 Chr10 47085454 47089518 -
Gso Gso10g2012 Chr10 47085454 47089518 -
Lal Lal12g0088 Chr12 607680 612063 +
Lapu Lapu4g00849 Chr4 21693090 21697161 +
Lja Lja5g0721 Chr5 6612493 6614805 +
Lja Lja2g2760 Chr2 41969046 41973442 +
Mal Mal1g2160 Chr1 28482390 28484708 +
Mtr Mtr1g3650 Chr1 48141212 48145087 -
Psa Psa6g4398 Chr6 385137034 385140371 -
Pste Pste9g01016 Chr9 6702985 6707162 -
Pumo Pumo6g02391 Chr6 47718975 47723865 -
Pvu Pvu4g1013 Chr4 26005465 26010088 -
Seca Seca10g03635 Chr10 68536429 68542610 -
Spst Spst4g03372 Chr4 73834977 73837996 +
Sto Sto10g2135 Chr10 31193207 31198065 -
Tpr Tpr1g0851 Chr1 7233882 7237866 +
Tsu Tsu01g04301 Chr01 50789061 50792831 -
Vian Vian8g00886 Chr8 20867707 20870180 -
Vimu Vimu8g02615 Chr8 36149836 36152315 +
Viun Viun4g01843 Chr4 32870415 32874381 -
Vvi Vvi18g1570 Chr18 19871854 19873053 -
Vvi Vvi18g1571 Chr18 19881500 19881979 +
Vvi Vvi18g1572 Chr18 19886916 19888111 -
Adu Adu05g03494 Chr05 107524996 107528808 +
Alju Alju02g3742 Chr02 56435370 56439666 -
Apr Apr6g1293 Chr6 18096853 18100247 +
Bach Bach1g00021 Chr1 216061 218413 -
Bisa Bisa01g0868 Chr01 14388164 14389020 +
Dere Dere06g1250 Chr06 24438280 24441324 +
Enph Enph12g0834 Chr12 14884115 14886277 +
Glsi Glsi01g1338 Chr01 67910263 67919863 -
Gma Gma16g01493 Chr16 34287857 34292540 -
Lal Lal1g0855 Chr1 5986366 5992015 -
Lal Lal2g0983 Chr2 6692843 6698781 +
Lja Lja2g2758 Chr2 41956516 41960707 +
Prci Prci14g2273 Chr14 29857994 29862832 -
Pste Pste9g01017 Chr9 6727295 6741132 -
Pumo Pumo6g02393 Chr6 47831953 47838255 -
Pvu Pvu4g1014 Chr4 26190308 26196236 -
Spst Spst4g03371 Chr4 73790262 73795282 +
Sto Sto10g2141 Chr10 31277525 31283106 -
Vifa Vifa1g04728 Chr1 740220181 740229363 +
Vimu Vimu8g02614 Chr8 36071285 36075938 +
Vvi Vvi18g1573 Chr18 19898145 19900430 -
Acco Acco01g0164 Chr01 1655242 1658059 +
Adu Adu05g03492 Chr05 107468721 107471978 +
Aev Aev09g2134 Chr09 24372271 24375213 -
Ahy Ahy19g2813 Chr19 150149455 150152687 -
Aip Aip09g03279 Chr09 138896674 138900277 -
Amo Amo19g3579 Chr19 150463168 150466484 -
Apr Apr6g1292 Chr6 17976372 17979869 -
Arst Arst5g04484 Chr5 106146882 106150389 +
Bach Bach1g00023 Chr1 248194 251464 -
Bisa Bisa01g0864 Chr01 14335283 14337939 +
Car Car04g01123 Chr04 11412404 11415344 -
Dere Dere06g1248 Chr06 24391359 24394079 +
Dod Dod06g0887 Chr06 11238585 11242541 -
Enph Enph12g0832 Chr12 14854495 14858192 +
Glsi Glsi01g1340 Chr01 67968208 67971000 -
Gma Gma10g02148 Chr10 48983476 48986219 +
Gma Gma20g01566 Chr20 42729286 42732538 -
Gma Gma16g01495 Chr16 34356242 34359871 -
Gso Gso10g2013 Chr10 47106177 47109721 +
Gso Gso10g2013 Chr10 47106177 47109721 +
Gso Gso10g2013 Chr10 47106177 47109721 +
Lal Lal12g0087 Chr12 592010 595471 -
Lal Lal24g0073 Chr24 456264 459306 -
Lal Lal2g0982 Chr2 6660245 6663784 +
Lal Lal9g0869 Chr9 6497164 6501127 +
Lasa Lasa1g02739 Chr1 532564596 532567641 -
Lele Lele45g0109 Chr45 1001042 1003793 +
Lele Lele46g0134 Chr46 772192 774977 +
Lele Lele47g1197 Chr47 17432943 17433614 -
Lja Lja5g0718 Chr5 6571792 6575255 +
Mal Mal1g2157 Chr1 28402285 28405113 +
Mepo Mepo5g04082 Chr5 51810474 51814098 +
Mesa Mesa22g01512 Chr22 31023404 31026442 -
Mtr Mtr1g3652 Chr1 48196771 48200272 -
Psa Psa6g4399 Chr6 385409547 385413372 +
Pste Pste9g01020 Chr9 6891837 6895132 -
Pte Pte9g00433 Chr9 5196865 5200035 +
Pumo Pumo6g02397 Chr6 47983341 47987029 -
Pvu Pvu4g1017 Chr4 26529723 26533405 -
Rops Rops5g01082 Chr5 22224476 22241514 +
Seca Seca10g03641 Chr10 69550432 69553462 -
Spst Spst4g03364 Chr4 73654743 73657573 +
Sto Sto10g2157 Chr10 31526328 31529065 -
Tpr Tpr1g0849 Chr1 7186045 7189641 +
Trre Trre11g01000 Chr11 9124039 9127187 -
Tsu Tsu01g04303 Chr01 50830127 50833751 -
Vian Vian8g00888 Chr8 21250246 21254078 -
Vimu Vimu8g02608 Chr8 35590012 35593989 +
Viun Viun4g01849 Chr4 33179385 33183023 -
Vivi Vivi2g05222 Chr2 175405213 175408888 +
Vvi Vvi18g1574 Chr18 19908503 19911607 +
Vvi Vvi18g1575 Chr18 19916150 19916425 -