Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1563 ATGTTGGAAGCTAAGAGCCTGAGAAAAGCAGTGGTGGCACCATCTCTTCTGGAAAATCCCTCTGCTGCAAACCTTCAGTCTACTCGCCTCGCTCTTCATGTTGATGGCGGCGGTTCTTCTTGCAGGGTTTACATCGCCTCTGGATGCTCCATTTACAGTGTTCAGATATCAATGGAAGATTCTTTGGTCAACAAAGGAAAAGAAAGCCTCTTGATTCCTGTAAGCGCACAGGTTATGGACTCATCCTTAGTTAATCGGTGCCCTCATCGATCGGAAATTCAGAGTATAGTGCTTGCTGAAACTGAGAGTCCTGACTGCTTAATTTTGGGAAGCGTGGATTCTTATGGTCATCTTATTGTATCTCAATTGGATCCTAGTAGTAAAGATGTTAACAGGGTTACACTTTCAGTATTGCCTCGGGATTGTGGTGTTGGAGAGGGTAGTTGGGCAGGGCTCTGCTTCAGTCCAAGTCAATGGTCCATGGCTGCTGTAGCACGTAGCTTCTGTAAAAGCATTGATGTCTATGACCAAGATATTCATCTTCGGACTCTACGTACGTTGTGGTATCCATCTTCATTGGACTTTATGCAAAACTTAAGTAATGGGAATGAAAGATCTATATTAGCTGTCACTGAAGGCTGTCAGCTGACAATATGGGACTTAAGAATGAAAGAGAATGGCGGTTGTGTGCATCGAATTTGTGGTCCCCTTGGAGATATCTTCTATGCTGTCACTAGTTCTTCAACTGGTAGTATTGCAGTGGGTGGTGCTGACCGTACTGTTACCATCTATGATCCTCGCAGATGGTCAGCATTATCAAGATGGGTGCATTGCTCAAAATATGAGATAACTGGACTTGCTTTCTCATCAAGTGACCCTGATTACATCTACATACAAGGGGTTGATTATGAGGTCTTTTGTGGACAATGGAATGAAAATAAGAAGGTATTTTCATTTAGAGGAGATTCAAACTGGCTTGGATTCAGTAAGTGCCCCAACAGAGATGTCTTAGGTGGGTGGTGCGATTCAGGTAGCATCTTTGTGGCTGATGTTGAAGCAAAGGAGAACAAAAGAGGTAGAGTTGAGAGGGTAAATGTGATAATGCCTGCTACGGACTTTCAGGGTTCATCATCGCCGTTCTCGAACATTGGCCGTTCGATCTTGAGCATTCGACGCGATCAGGTCCATTCCATGGAGGGGACTCATGAAGTCACCGGCTTGGAGGTGGAGCTGGAGGCGTTTCAGAGGCAGGTAGCCGACCGGTTTCTGCAGGTGTCTTCGGGGTCGTCGGAGCTTCTGTCGTTGTCCTGGGTCAGGAAGCTTCTGGATGTGTTCCTCTGCTGTCAGGAGGAATTTAGGGTTATTTTGTTCAATAACAAAGCGAGTTTGGGGAGAGCTCCGATGGATCGGTTGATTGGGGAGTTCTTTGAGCGGAGTGTGAAGGCGTTGGATGTTTGTAATGCGATTCGTGACGGAATTGAGCATATTCGCCAATGGCACAAGCTTCTGGAGATTGTGCCGTGCGCTTTAGACAACCAGAGGAGTCTCGGGGAGGGCCAATTCCGCCGCGCCAAGAAGGCCTTGATCGATTTGGCGATCGGTATGCTTGACGAGAGGGACTCCAGCGTCTCCGTGGCCCATCGGAACCGGTCCTTCGGCCGGAATAACGTCAGCCGCGACCACCGGTCTTTGGGGCACTTCAGGTCGCTGTCGTGGAGCGTTTCCCGGTCGTGGTCTGCGGCGAGGCAGCTTCAGGCGATTGGGAACAACTTGGCAGCGCCGAGGGCGAATGAGATTGTTGCCTCTCGAGGACTCGCGGTGGCAGTTTTCACAATGAGCTCGGTTTTGTTGTTTGTAATGTGGGCTCTTGTGGCCGCGATTCCGTGCCAGGATCGAGGGCTTCAGGTTCATTTTTCAATTCCCAAGAATTTCAGTTGGGCGGCTCCGATGCAATCACTGCATGATCGGATTATTGAGGAGTCCCGGAGAAGGGACCGGAGGAATGCTTGTGGGCTGTTGAAGGAGATTCATCAGATTGAGAAATGCACCCGACACATGAATGAATTGGCAGACTCAGTTCAATTCCCATTAACGGAGGAAAGGGAGGCTGAGGTGAGACAGAGAGTGCAGGAGCTGGGGCAGGTGTGCCAAACTATAAAGGCAGGATTGGACCCCTTGGAGCGCCAAGTGAGGGAAGTGTTCCATAGGATTGTGCGCAGCCGAACTGAGGGTCTGGACACCTTGGGAAGGGCTAACAATGAGTGA 2265 0.4927 MLEAKSLRKAVVAPSLLENPSAANLQSTRLALHVDGGGSSCRVYIASGCSIYSVQISMEDSLVNKGKESLLIPVSAQVMDSSLVNRCPHRSEIQSIVLAETESPDCLILGSVDSYGHLIVSQLDPSSKDVNRVTLSVLPRDCGVGEGSWAGLCFSPSQWSMAAVARSFCKSIDVYDQDIHLRTLRTLWYPSSLDFMQNLSNGNERSILAVTEGCQLTIWDLRMKENGGCVHRICGPLGDIFYAVTSSSTGSIAVGGADRTVTIYDPRRWSALSRWVHCSKYEITGLAFSSSDPDYIYIQGVDYEVFCGQWNENKKVFSFRGDSNWLGFSKCPNRDVLGGWCDSGSIFVADVEAKENKRGRVERVNVIMPATDFQGSSSPFSNIGRSILSIRRDQVHSMEGTHEVTGLEVELEAFQRQVADRFLQVSSGSSELLSLSWVRKLLDVFLCCQEEFRVILFNNKASLGRAPMDRLIGEFFERSVKALDVCNAIRDGIEHIRQWHKLLEIVPCALDNQRSLGEGQFRRAKKALIDLAIGMLDERDSSVSVAHRNRSFGRNNVSRDHRSLGHFRSLSWSVSRSWSAARQLQAIGNNLAAPRANEIVASRGLAVAVFTMSSVLLFVMWALVAAIPCQDRGLQVHFSIPKNFSWAAPMQSLHDRIIEESRRRDRRNACGLLKEIHQIEKCTRHMNELADSVQFPLTEEREAEVRQRVQELGQVCQTIKAGLDPLERQVREVFHRIVRSRTEGLDTLGRANNE* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1563 754 PANTHER OS01G0867200 PROTEIN 1 355 - -
Vvi18g1563 754 Pfam Protein ROH1-like 368 748 IPR008511 -
Vvi18g1563 754 SUPERFAMILY WD40 repeat-like 92 352 IPR036322 GO:0005515
Vvi18g1563 754 Gene3D - 49 326 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1563 Vvi-Chr18 19720893 19740259 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1563 - - vvi:100257198 748.429